Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4184g00045 ATGAAGCTTTCTTCTTCTTCTGGATTTAATCAACAGGCTGAGGAAGAAGGGGAGAAAAAGTGCTTGAATTCTGAACTTTGGCATGCATGTGCTGGCCCTCTTGTTTCTCTTCCTCCTGTTGGAAGTCGTGTAGTTTACTTTCCCCAAGGTCACAGTGAGCAGGTTGCTGCTTCAACCAACAGGGAAATAGATGTACATATTCCTAATTACCCTAACTTGCCACCACAGCTTATCTGTCAGCTTCACAATGTGACAATGCATGCAGATGCTGAAACAGATGAAGTATATGCTCAAATGACTTTGCAACCTCTAAGTCCGCAAGAGCAAAAGGAGGCGTATCTGCTACCTGCAGAATTGGGTACTCCCAGCAAACAACCAACCAACTACTTCTGTAAAACATTAACTGCAAGTGATACCAGCACTCATGGAGGATTTTCTGTTCCTCGAAGAGCAGCTGAAAAAGTCTTCCCTCCTCTTGATTACTCACAGCAGCCTCCTGCCCAAGAACTAACTGCCAGAGATCTTCATGATAATGAATGGAAATTCAGACATATATTTCGAGGTCAGCCCAAAAGGCATCTTCTTACTACAGGGTGGAGTGTCTTTGTCAGTACTAAGAGGCTTGTTGCTGGTGATTCAGTCCTTTTCATCTGGGCAAGCCCATCTGAATTTGTCATTGCCTTGGCCAAGTTCTTTAAAGCTGTGTATCATACACGAGTCTTTGTTGGCATGCGATTTAGGATGCTCTTTGAGACAGAAGAATCAAGTGTACGTCGATACATGGGTACTATAACAGGTATTAGTGATTTAGATCCGGTCCGCTGGCCAAATTCACACTGGCGTTCTGTGAAGGTTGGCTGGGATGAATCTACTGCAGGAGAGAAGCAACCAAGAGTTTCCTTGTGGGAAATTGAACCTTTGACAACATTTCCAGTGTATCCGTCTCCATTCCCCATGAGGTTGAGGCGCCCTTGGCCATCAGGACTACCTTCTTTATATGGTCTCAAAGATGGGGACATGAACATTGGTTCTCCGTTCATGTGGCTCCAAGGTGGGCTTGGGGATCAAGGAATGCAATCTTTGAACTTCCAGGGGCTTGGTGTGACACCATGGATGCAACCAAGAGTTGATGCTTCTATGCCAGGTCTCCAGCCAGAGACATATCAAGCAGTGGCTTCTTCTGCATTCCAGGAAATGAGGGCAATGGATCCTTCAAAATCGTCTTCCCAGTCTCTGTTGCAGTTTCAGCAGACTTCAAATGTTCCCTGTGCTCATACGTCTGAGATACAGAGGCAAGTATTACCACAGTCTCAGCCCCAAAACACCCTTCTACACAATTTTCAAGAAAACCAGGTGCCTGCTCAGTCACAACTTCTGCAACAACAGTTGCATCGTTACCACCCATATAGTGATCAGCGGCAACAGCAGCAGCAACTTAAAAATTTGCCTGTTCAGCAGCAGTTACCAAATGTCATATTTCCTTTATCTAATTTTGCATCAGGTACCCAGTCTCAATCTCCATCCATGCAAGCCCTAGCTTCACAGTGCCAGCAGCAGAGCTTTCCTGAACCTAGCAGGAACAATATTTCCAGCTCGGATGTTTCCCCTATCCAGAGTATACTAGGTTCATTCTCCCAGGATGGAACATCCCAGTTACTTAACATAAATGGATCCAATTCTTCCATATCTTCCGCAGCCGTACTACCTAAGCAAATAACTGTTGAACCTCAGCTTCCATCTGCTGCTGCTCAGTGTCTATTGCCTCAGGTGGAAAACTTGGGAACATCACAATCAAATGTGTCTGAGCTTGCTGCTTTGCCTCCATTTCCTGGAAGAGAACATTCTGCATACCATGGTGCTGCTGATCCTCAGAGCAATCTGTTATTTGGGATTAACATAGATCCCTCTTCTCTTATGCTTCAAAATGGCATATCAAACCTGAGAAATATAGGGAATGTGAATGATTCATTGTCATTGCCATTTTCTGCTTCAAATTGTGGTGATGCTACTGGCACTGATTTCCCCCTAAGTTCAAACATGCCAACTTCAAGTTGTGTGGATGAATCAGGCTTCTTGCAGTCTTCTGAAAATGTAGACCAGGCAAATACACCAACTGGAACCTTTGTGAAGGTTCACAAGTCAGGGTCCTTTGGGAGGTCGCTGGACATTTCTAAGTTCAGCAGCTATGATGAGCTGCGCAGTGAGCTTGCTCGCCTTTTTGGCCTTGAAGGCCAACTAGAGGACCCTCAGACTCAGAGATCAGGCTGGCAGCTTGTATTTGTTGACCGAGAGAATGATATTCTCCTTCTTGGTGATGATCCTTGGCAGGAGTTTGTGAACAATGTTTGGTACATCAAGATACTGTCTCCACTAGAAGTGCAACAAATGGGCAGTCCTTCTACTTCTGCCCCAGGTCACAAACTTTCTACTACTGGCAACTCATGGGATAATTATGTGAGTCAACAAGAGTTGAGAGGTTCGAGAAATAGCATGGCATCAATGGGGTCTTTTCACTACTAG 2520 0.4504 MKLSSSSGFNQQAEEEGEKKCLNSELWHACAGPLVSLPPVGSRVVYFPQGHSEQVAASTNREIDVHIPNYPNLPPQLICQLHNVTMHADAETDEVYAQMTLQPLSPQEQKEAYLLPAELGTPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDYSQQPPAQELTARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSTKRLVAGDSVLFIWASPSEFVIALAKFFKAVYHTRVFVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVKVGWDESTAGEKQPRVSLWEIEPLTTFPVYPSPFPMRLRRPWPSGLPSLYGLKDGDMNIGSPFMWLQGGLGDQGMQSLNFQGLGVTPWMQPRVDASMPGLQPETYQAVASSAFQEMRAMDPSKSSSQSLLQFQQTSNVPCAHTSEIQRQVLPQSQPQNTLLHNFQENQVPAQSQLLQQQLHRYHPYSDQRQQQQQLKNLPVQQQLPNVIFPLSNFASGTQSQSPSMQALASQCQQQSFPEPSRNNISSSDVSPIQSILGSFSQDGTSQLLNINGSNSSISSAAVLPKQITVEPQLPSAAAQCLLPQVENLGTSQSNVSELAALPPFPGREHSAYHGAADPQSNLLFGINIDPSSLMLQNGISNLRNIGNVNDSLSLPFSASNCGDATGTDFPLSSNMPTSSCVDESGFLQSSENVDQANTPTGTFVKVHKSGSFGRSLDISKFSSYDELRSELARLFGLEGQLEDPQTQRSGWQLVFVDRENDILLLGDDPWQEFVNNVWYIKILSPLEVQQMGSPSTSAPGHKLSTTGNSWDNYVSQQELRGSRNSMASMGSFHY 839
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4184g00045 839 SUPERFAMILY DNA-binding pseudobarrel domain 115 224 IPR015300 -
Gabi4184g00045 839 SMART B3_2 130 234 IPR003340 GO:0003677
Gabi4184g00045 839 FunFam Auxin response factor 128 231 - -
Gabi4184g00045 839 SUPERFAMILY CAD & PB1 domains 699 782 - -
Gabi4184g00045 839 FunFam Auxin response factor 701 797 - -
Gabi4184g00045 839 Gene3D - 702 797 - -
Gabi4184g00045 839 CDD B3_DNA 129 226 IPR003340 GO:0003677
Gabi4184g00045 839 FunFam Auxin response factor 239 311 - -
Gabi4184g00045 839 Gene3D - 128 231 IPR015300 -
Gabi4184g00045 839 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 18 217 IPR044835 GO:0003677|GO:0006355|GO:0009725
Gabi4184g00045 839 ProSiteProfiles PB1 domain profile. 706 792 IPR000270 GO:0005515
Gabi4184g00045 839 MobiDBLite consensus disorder prediction 795 814 - -
Gabi4184g00045 839 MobiDBLite consensus disorder prediction 499 533 - -
Gabi4184g00045 839 Pfam AUX/IAA family 696 790 IPR033389 -
Gabi4184g00045 839 Pfam B3 DNA binding domain 130 224 IPR003340 GO:0003677
Gabi4184g00045 839 Pfam Auxin response factor 218 284 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Gabi4184g00045 839 Gene3D - 239 311 - -
Gabi4184g00045 839 ProSiteProfiles B3 DNA-binding domain profile. 130 232 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4184g00045 Gabi-Chr4184 370942 378671 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4184g00045 473 839 B3 DNA Binding Superfamily AT1G30330 51.169 1.03e-88 299
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Gabi4184g00045 AUX_IAA 5.4e-08 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4184g00045 - - qsa:O6P43_021012 1238.02