Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4184g00044 ATGAAGCTTTCTTCTTCTTCTGGATTTAATCAACAGGCTGAGGAAGAAGGGGAGAAAAAGTGCTTGAATTCTGAACTTTGGCATGCATGTGCTGGCCCTCTTGTTTCTCTTCCTCCTGTTGGAAGTCGTGTAGTTTACTTTCCCCAAGGTCACAGTGAGCAGGTTGCTGCTTCAACCAACAGGGAAATAGATGTACATATTCCTAATTACCCTAACTTGCCACCACAGCTTATCTGTCAGCTTCACAATGTGACAATGCATGCAGATGCTGAAACAGATGAAGTATATGCTCAAATGACTTTGCAACCTCTAAGTCCGCAAGAGCAAAAGGAGGCGTATCTGCTACCTGCAGAATTGGGTACTCCCAGCAAACAACCAACCAACTACTTCTGTAAAACATTAACTGCAAGTGATACCAGCACTCATGGAGGATTTTCTGTTCCTCGAAGAGCAGCTGAAAAAGTCTTCCCTCCTCTTGATTACTCACAGCAGCCTCCTGCCCAAGAACTAACTGCCAGAGATCTTCATGATAATGAATGGAAATTCAGACATATATTTCGAGGTCAGCCCAAAAGGCATCTTCTTACTACAGGGTGGAGTGTCTTTGTCAGTACTAAGAGGCTTGTTGCTGGTGATTCAGTCCTTTTCATCTGGAATGAAAAAAATCAATTACTCTTGGGCATACGACGAGCAAATCGTCCACAGACTATCATGCCATCATCAGTTCTGTCAAGTGACAGCATGCACATTGGCCTTCTCGCTGCTGCAGCTCATGCAGCTGCCACAAATAGCCGCTTTACTATATTCTATAATCCTAGGGCAAGCCCATCTGAATTTGTCATTGCCTTGGCCAAGTTCTTTAAAGCTGTGTATCATACACGAGTCTTTGTTGGCATGCGATTTAGGATGCTCTTTGAGACAGAAGAATCAAGTGTACGTCGATACATGGGTACTATAACAGGTATTAGTGATTTAGATCCGGTCCGCTGGCCAAATTCACACTGGCGTTCTGTGAAGGTTGGCTGGGATGAATCTACTGCAGGAGAGAAGCAACCAAGAGTTTCCTTGTGGGAAATTGAACCTTTGACAACATTTCCAGTGTATCCGTCTCCATTCCCCATGAGGTTGAGGCGCCCTTGGCCATCAGGACTACCTTCTTTATATGGTCTCAAAGATGGGGACATGAACATTGGTTCTCCGTTCATGTGGCTCCAAGGTGGGCTTGGGGATCAAGGAATGCAATCTTTGAACTTCCAGGGGCTTGGTGTGACACCATGGATGCAACCAAGAGTTGATGCTTCTATGCCAGGTCTCCAGCCAGAGACATATCAAGCAGTGGCTTCTTCTGCATTCCAGGAAATGAGGGCAATGGATCCTTCAAAATCGTCTTCCCAGTCTCTGTTGCAGTTTCAGCAGACTTCAAATGTTCCCTGTGCTCATACGTCTGAGATACAGAGGCAAGTATTACCACAGTCTCAGCCCCAAAACACCCTTCTACACAATTTTCAAGAAAACCAGGTGCCTGCTCAGTCACAACTTCTGCAACAACAGTTGCATCGTTACCACCCATATAGTGATCAGCGGCAACAGCAGCAGCAACTTAAAAATTTGCCTGTTCAGCAGCAGTTACCAAATGTCATATTTCCTTTATCTAATTTTGCATCAGGTACCCAGTCTCAATCTCCATCCATGCAAGCCCTAGCTTCACAGTGCCAGCAGCAGAGCTTTCCTGAACCTAGCAGGAACAATATTTCCAGCTCGGATGTTTCCCCTATCCAGAGTATACTAGGTTCATTCTCCCAGGATGGAACATCCCAGTTACTTAACATAAATGGATCCAATTCTTCCATATCTTCCGCAGCCGTACTACCTAAGCAAATAACTGTTGAACCTCAGCTTCCATCTGCTGCTGCTCAGTGTCTATTGCCTCAGGTGGAAAACTTGGGAACATCACAATCAAATGTGTCTGAGCTTGCTGCTTTGCCTCCATTTCCTGGAAGAGAACATTCTGCATACCATGGTGCTGCTGATCCTCAGAGCAATCTGTTATTTGGGATTAACATAGATCCCTCTTCTCTTATGCTTCAAAATGGCATATCAAACCTGAGAAATATAGGGAATGTGAATGATTCATTGTCATTGCCATTTTCTGCTTCAAATTGTGGTGATGCTACTGGCACTGATTTCCCCCTAAGTTCAAACATGCCAACTTCAAGTTGTGTGGATGAATCAGGCTTCTTGCAGTCTTCTGAAAATGTAGACCAGGCAAATACACCAACTGGAACCTTTGTGAAGGTTCACAAGTCAGGGTCCTTTGGGAGGTCGCTGGACATTTCTAAGTTCAGCAGCTATGATGAGCTGCGCAGTGAGCTTGCTCGCCTTTTTGGCCTTGAAGGCCAACTAGAGGACCCTCAGACTCAGAGATCAGGCTGGCAGCTTGTATTTGTTGACCGAGAGAATGATATTCTCCTTCTTGGTGATGATCCTTGGCAGGAGTTTGTGAACAATGTTTGGTACATCAAGATACTGTCTCCACTAGAAGTGCAACAAATGGGCAGTCCTTCTACTTCTGCCCCAGGTCACAAACTTTCTACTACTGGCAACTCATGGGATAATTATGTGAGTCAACAAGAGTTGAGAGGTTCGAGAAATAGCATGGCATCAATGGGGTCTTTTCACTACTAG 2685 0.4499 MKLSSSSGFNQQAEEEGEKKCLNSELWHACAGPLVSLPPVGSRVVYFPQGHSEQVAASTNREIDVHIPNYPNLPPQLICQLHNVTMHADAETDEVYAQMTLQPLSPQEQKEAYLLPAELGTPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDYSQQPPAQELTARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSTKRLVAGDSVLFIWNEKNQLLLGIRRANRPQTIMPSSVLSSDSMHIGLLAAAAHAAATNSRFTIFYNPRASPSEFVIALAKFFKAVYHTRVFVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVKVGWDESTAGEKQPRVSLWEIEPLTTFPVYPSPFPMRLRRPWPSGLPSLYGLKDGDMNIGSPFMWLQGGLGDQGMQSLNFQGLGVTPWMQPRVDASMPGLQPETYQAVASSAFQEMRAMDPSKSSSQSLLQFQQTSNVPCAHTSEIQRQVLPQSQPQNTLLHNFQENQVPAQSQLLQQQLHRYHPYSDQRQQQQQLKNLPVQQQLPNVIFPLSNFASGTQSQSPSMQALASQCQQQSFPEPSRNNISSSDVSPIQSILGSFSQDGTSQLLNINGSNSSISSAAVLPKQITVEPQLPSAAAQCLLPQVENLGTSQSNVSELAALPPFPGREHSAYHGAADPQSNLLFGINIDPSSLMLQNGISNLRNIGNVNDSLSLPFSASNCGDATGTDFPLSSNMPTSSCVDESGFLQSSENVDQANTPTGTFVKVHKSGSFGRSLDISKFSSYDELRSELARLFGLEGQLEDPQTQRSGWQLVFVDRENDILLLGDDPWQEFVNNVWYIKILSPLEVQQMGSPSTSAPGHKLSTTGNSWDNYVSQQELRGSRNSMASMGSFHY 894
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4184g00044 894 MobiDBLite consensus disorder prediction 850 869 - -
Gabi4184g00044 894 Pfam Auxin response factor 256 339 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Gabi4184g00044 894 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 18 852 IPR044835 GO:0003677|GO:0006355|GO:0009725
Gabi4184g00044 894 Pfam B3 DNA binding domain 130 231 IPR003340 GO:0003677
Gabi4184g00044 894 CDD B3_DNA 129 230 IPR003340 GO:0003677
Gabi4184g00044 894 Gene3D - 757 852 - -
Gabi4184g00044 894 ProSiteProfiles PB1 domain profile. 761 847 IPR000270 GO:0005515
Gabi4184g00044 894 Pfam AUX/IAA family 751 845 IPR033389 -
Gabi4184g00044 894 SMART B3_2 130 232 IPR003340 GO:0003677
Gabi4184g00044 894 FunFam Auxin response factor 128 232 - -
Gabi4184g00044 894 SUPERFAMILY CAD & PB1 domains 754 837 - -
Gabi4184g00044 894 SUPERFAMILY DNA-binding pseudobarrel domain 115 259 IPR015300 -
Gabi4184g00044 894 Gene3D - 294 366 - -
Gabi4184g00044 894 FunFam Auxin response factor 294 366 - -
Gabi4184g00044 894 Gene3D - 128 231 IPR015300 -
Gabi4184g00044 894 FunFam Auxin response factor 756 852 - -
Gabi4184g00044 894 MobiDBLite consensus disorder prediction 554 588 - -
Gabi4184g00044 894 ProSiteProfiles B3 DNA-binding domain profile. 130 232 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4184g00044 Gabi-Chr4184 370941 378671 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4184g00044 99 860 B3 DNA Binding Superfamily AT5G37020 54.734 0.0 691
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Gabi4184g00044 AUX_IAA 5.9e-08 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4184g00044 - - gmx:100809105 1610.12