Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4184g00037 ATGCATAGCCAAACACATAGAAAACCAGTTGTGAATTCATCTGACTTGAGACAAGTTCACAAAACTGATCGATCAACATTAAGGACTAGTGGGCCACGTGGGAACTCACCTAACTTGAGTCATCAAGATGAGACAGTCTCATGGATCCAATACCCTCTTGAGGATCCATTGGAACAAGAATTCTATTCAAACCTTTTATCTGAGCTAGCAGCACCATGTGAAGTTGAGTCTTACAAGCCATTCGAGCAATTGGAAGAGGGAAAGTCTGCCAAAGTTGTTGCCTCTAGTTCCCCTCTCTCAACTTCAATTTTACAAGCACCTAATAATAATATGAAACCCTCTTGTGTTCAGGAATTCCAAGGAAATCCCATGCCTGCTCCAAGATTTCAGGTTCCTGATTCATCTCAGAAAATCAATGACTTTGGTGGAACACGAAAGGTCCAAAAAATTTCTCACTTTTCAACACCCCCTATTGTTTCTTCAGCATCTGCTGGTGCACAGTTTAGAGAGAAAGTTAATGCTAATCTATCACAAAGTAAGGCCAGAGAGTGCTCAGTGATGACAGTTGGTTCAAGTCACTGTGGCAGCAATCACATCCTTCAGGACCCAGATGTGAGTAGGGCATCAAGTAATGGTGTTTGGACTACTACTTTATCTGCTGAGCCTGAAGCTGTTAGAGATTGTGTCAAGAGAACAATTCCTCGGAGTGATAAAGGAAAATCAGAGATGGTGGAACCAACTCTAACTTCATCTTCTGGTGGCTCAGGCAGTAGTATTGGAAGAACTTGTTCCCTATCAACAAGAAATCATAGCCGAAAGAGAAAAGGGACAGATGCAGAAGCATCAGAGGAACAAAGTGAGGCCACAGAACTTAAATCAGCAGATGGAAACAAGGCATCTAAGAGGGCAGGGTCTTACAGAAGAAGCCGTGCAGCTGAAGTGCATAATCTATCAGAAAGGAGACGAAGAGATAGGATCAATGAGAAGATGAAGGCACTGCAGCAACTGATACCTAACAGTAACAAGACAGACAAAGCATCAATGTTAGATGAGGCAGTCGAATACTTGAAATCGCTTCAGTTACAGCTTCAGGTAATGTGGATGGGGGCTGGTATGACACCAATGATGTTTCCAGGAATTCAGCACTATATGTCACAAATGAGTATGGGAATGACTGCACCTTCTTTGCCTTCTATTCACCATTCAATGCAATTACCGAGAGTACCACATGATCAGTCCATATCTGTAGCTCAGATACCAAACCAGACTGTGATGTCCCAAAATCCAGTTTTGGATGCGTTTAATTACCAAAATCAGATGCAAAACCCATGCCTTTCAGAGCAATATGCACGTTACATGGCTTATCATCTTATGCAAAGTGCCTCCCAGCCAATGTATGCATACAGATATGGTTCCCAGCCAGCACAACATACTCAAACAATTGCACCCAGCAATAACAACAGTGGACCCGGGAGTGGAGCAGCTAATATTGATAATGCTGTGAGTGGCAAAATTGGTTCTTCCACCTTTAACTGA 1536 0.4271 MHSQTHRKPVVNSSDLRQVHKTDRSTLRTSGPRGNSPNLSHQDETVSWIQYPLEDPLEQEFYSNLLSELAAPCEVESYKPFEQLEEGKSAKVVASSSPLSTSILQAPNNNMKPSCVQEFQGNPMPAPRFQVPDSSQKINDFGGTRKVQKISHFSTPPIVSSASAGAQFREKVNANLSQSKARECSVMTVGSSHCGSNHILQDPDVSRASSNGVWTTTLSAEPEAVRDCVKRTIPRSDKGKSEMVEPTLTSSSGGSGSSIGRTCSLSTRNHSRKRKGTDAEASEEQSEATELKSADGNKASKRAGSYRRSRAAEVHNLSERRRRDRINEKMKALQQLIPNSNKTDKASMLDEAVEYLKSLQLQLQVMWMGAGMTPMMFPGIQHYMSQMSMGMTAPSLPSIHHSMQLPRVPHDQSISVAQIPNQTVMSQNPVLDAFNYQNQMQNPCLSEQYARYMAYHLMQSASQPMYAYRYGSQPAQHTQTIAPSNNNSGPGSGAANIDNAVSGKIGSSTFN 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4184g00037 511 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 310 359 IPR011598 GO:0046983
Gabi4184g00037 511 MobiDBLite consensus disorder prediction 13 27 - -
Gabi4184g00037 511 PANTHER TRANSCRIPTION FACTOR PIF3 34 477 IPR044273 GO:0003700|GO:0006355
Gabi4184g00037 511 MobiDBLite consensus disorder prediction 28 43 - -
Gabi4184g00037 511 MobiDBLite consensus disorder prediction 477 511 - -
Gabi4184g00037 511 SMART finulus 316 365 IPR011598 GO:0046983
Gabi4184g00037 511 CDD bHLH_AtPIF_like 310 373 IPR047265 -
Gabi4184g00037 511 MobiDBLite consensus disorder prediction 243 266 - -
Gabi4184g00037 511 Coils Coil 316 336 - -
Gabi4184g00037 511 MobiDBLite consensus disorder prediction 306 323 - -
Gabi4184g00037 511 MobiDBLite consensus disorder prediction 231 323 - -
Gabi4184g00037 511 MobiDBLite consensus disorder prediction 1 43 - -
Gabi4184g00037 511 Gene3D - 306 366 IPR036638 GO:0046983
Gabi4184g00037 511 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 308 375 IPR036638 GO:0046983
Gabi4184g00037 511 MobiDBLite consensus disorder prediction 271 297 - -
Gabi4184g00037 511 Pfam Helix-loop-helix DNA-binding domain 314 360 IPR011598 GO:0046983
Gabi4184g00037 511 FunFam Basic helix-loop-helix transcription factor 305 368 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4184g00037 Gabi-Chr4184 264532 268701 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4184g00037 185 488 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G59060 41.768 4.17e-46 165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gabi4184g00037 HLH 3.4e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4184g00037 K16189 - gmx:100811345 700.664