Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4184g00036 ATGAACAGCAGTATTCCAGGTTGGAATTTTGAGAGTGAGACCTTTGTCACCAATCAAAAGAAACCCATAGGGCCAGAAGGAGAACTTGTAGAGCTCCTATGGCAAAATGGGCAAGTAGTTATGCATAGCCAAACACATAGAAAACCAGTTGTGAATTCATCTGACTTGAGACAAGTTCACAAAACTGATCGATCAACATTAAGGACTAGTGGGCCACGTGGGAACTCACCTAACTTGAGTCATCAAGATGAGACAGTCTCATGGATCCAATACCCTCTTGAGGATCCATTGGAACAAGAATTCTATTCAAACCTTTTATCTGAGCTAGCAGCACCATGTGAAGTTGAGTCTTACAAGCCATTCGAGCAATTGGAAGAGGGAAAGTCTGCCAAAGAATTCCAAGGAAATCCCATGCCTGCTCCAAGATTTCAGGTTCCTGATTCATCTCAGAAAATCAATGACTTTGGTGGAACACGAAAGGTCCAAAAAATTTCTCACTTTTCAACACCCCCTATTGTTTCTTCAGCATCTGCTGGTGCACAGTTTAGAGAGAAAGTTAATGCTAATCTATCACAAAGTAAGGCCAGAGAGTGCTCAGTGATGACAGTTGGTTCAAGTCACTGTGGCAGCAATCACATCCTTCAGGACCCAGATGTGAGTAGGGCATCAAGTAATGGTGTTTGGACTACTACTTTATCTGCTGAGCCTGAAGCTGTTAGAGATTGTGTCAAGAGAACAATTCCTCGGAGTGATAAAGGAAAATCAGAGATGGTGGAACCAACTCTAACTTCATCTTCTGGTGGCTCAGGCAGTAGTATTGGAAGAACTTGTTCCCTATCAACAAGAAATCATAGCCGAAAGAGAAAAGGGACAGATGCAGAAGCATCAGAGGAACAAAGTGAGGCCACAGAACTTAAATCAGCAGATGGAAACAAGGCATCTAAGAGGGCAGGGTCTTACAGAAGAAGCCGTGCAGCTGAAGTGCATAATCTATCAGAAAGGAGACGAAGAGATAGGATCAATGAGAAGATGAAGGCACTGCAGCAACTGATACCTAACAGTAACAAGACAGACAAAGCATCAATGTTAGATGAGGCAGTCGAATACTTGAAATCGCTTCAGTTACAGCTTCAGGTAATGTGGATGGGGGCTGGTATGACACCAATGATGTTTCCAGGAATTCAGCACTATATGTCACAAATGAGTATGGGAATGACTGCACCTTCTTTGCCTTCTATTCACCATTCAATGCAATTACCGAGAGTACCACATGATCAGTCCATATCTGTAGCTCAGATACCAAACCAGACTGTGATGTCCCAAAATCCAGTTTTGGATGCGTTTAATTACCAAAATCAGATGCAAAACCCATGCCTTTCAGAGCAATATGCACGTTACATGGCTTATCATCTTATGCAAAGTGCCTCCCAGCCAATGTATGCATACAGATATGGTTCCCAGCCAGCACAACATACTCAAACAATTGCACCCAGCAATAACAACAGTGGACCCGGGAGTGGAGCAGCTAATATTGATAATGCTGTGAGTGGCAAAATTGGTTCTTCCACCTTTAACTGA 1578 0.4297 MNSSIPGWNFESETFVTNQKKPIGPEGELVELLWQNGQVVMHSQTHRKPVVNSSDLRQVHKTDRSTLRTSGPRGNSPNLSHQDETVSWIQYPLEDPLEQEFYSNLLSELAAPCEVESYKPFEQLEEGKSAKEFQGNPMPAPRFQVPDSSQKINDFGGTRKVQKISHFSTPPIVSSASAGAQFREKVNANLSQSKARECSVMTVGSSHCGSNHILQDPDVSRASSNGVWTTTLSAEPEAVRDCVKRTIPRSDKGKSEMVEPTLTSSSGGSGSSIGRTCSLSTRNHSRKRKGTDAEASEEQSEATELKSADGNKASKRAGSYRRSRAAEVHNLSERRRRDRINEKMKALQQLIPNSNKTDKASMLDEAVEYLKSLQLQLQVMWMGAGMTPMMFPGIQHYMSQMSMGMTAPSLPSIHHSMQLPRVPHDQSISVAQIPNQTVMSQNPVLDAFNYQNQMQNPCLSEQYARYMAYHLMQSASQPMYAYRYGSQPAQHTQTIAPSNNNSGPGSGAANIDNAVSGKIGSSTFN 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4184g00036 525 CDD bHLH_AtPIF_like 324 387 IPR047265 -
Gabi4184g00036 525 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 322 389 IPR036638 GO:0046983
Gabi4184g00036 525 PANTHER TRANSCRIPTION FACTOR PIF3 14 491 IPR044273 GO:0003700|GO:0006355
Gabi4184g00036 525 MobiDBLite consensus disorder prediction 257 280 - -
Gabi4184g00036 525 FunFam Basic helix-loop-helix transcription factor 319 382 - -
Gabi4184g00036 525 Coils Coil 330 350 - -
Gabi4184g00036 525 SMART finulus 330 379 IPR011598 GO:0046983
Gabi4184g00036 525 MobiDBLite consensus disorder prediction 53 67 - -
Gabi4184g00036 525 MobiDBLite consensus disorder prediction 285 311 - -
Gabi4184g00036 525 MobiDBLite consensus disorder prediction 68 83 - -
Gabi4184g00036 525 Gene3D - 320 380 IPR036638 GO:0046983
Gabi4184g00036 525 Pfam Helix-loop-helix DNA-binding domain 328 374 IPR011598 GO:0046983
Gabi4184g00036 525 MobiDBLite consensus disorder prediction 44 83 - -
Gabi4184g00036 525 MobiDBLite consensus disorder prediction 245 338 - -
Gabi4184g00036 525 MobiDBLite consensus disorder prediction 320 338 - -
Gabi4184g00036 525 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 324 373 IPR011598 GO:0046983
Gabi4184g00036 525 MobiDBLite consensus disorder prediction 491 525 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4184g00036 Gabi-Chr4184 264531 268701 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4184g00036 1 502 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G59060 35.701 2.67e-62 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gabi4184g00036 HLH 3.5e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4184g00036 K16189 - gmx:100811345 734.561