LGRPv2

Gene search

Sequence information

Show entries

Search:

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gabi4184g00036	ATGAACAGCAGTATTCCAGGTTGGAATTTTGAGAGTGAGACCTTTGTCACCAATCAAAAGAAACCCATAGGGCCAGAAGGAGAACTTGTAGAGCTCCTATGGCAAAATGGGCAAGTAGTTATGCATAGCCAAACACATAGAAAACCAGTTGTGAATTCATCTGACTTGAGACAAGTTCACAAAACTGATCGATCAACATTAAGGACTAGTGGGCCACGTGGGAACTCACCTAACTTGAGTCATCAAGATGAGACAGTCTCATGGATCCAATACCCTCTTGAGGATCCATTGGAACAAGAATTCTATTCAAACCTTTTATCTGAGCTAGCAGCACCATGTGAAGTTGAGTCTTACAAGCCATTCGAGCAATTGGAAGAGGGAAAGTCTGCCAAAGAATTCCAAGGAAATCCCATGCCTGCTCCAAGATTTCAGGTTCCTGATTCATCTCAGAAAATCAATGACTTTGGTGGAACACGAAAGGTCCAAAAAATTTCTCACTTTTCAACACCCCCTATTGTTTCTTCAGCATCTGCTGGTGCACAGTTTAGAGAGAAAGTTAATGCTAATCTATCACAAAGTAAGGCCAGAGAGTGCTCAGTGATGACAGTTGGTTCAAGTCACTGTGGCAGCAATCACATCCTTCAGGACCCAGATGTGAGTAGGGCATCAAGTAATGGTGTTTGGACTACTACTTTATCTGCTGAGCCTGAAGCTGTTAGAGATTGTGTCAAGAGAACAATTCCTCGGAGTGATAAAGGAAAATCAGAGATGGTGGAACCAACTCTAACTTCATCTTCTGGTGGCTCAGGCAGTAGTATTGGAAGAACTTGTTCCCTATCAACAAGAAATCATAGCCGAAAGAGAAAAGGGACAGATGCAGAAGCATCAGAGGAACAAAGTGAGGCCACAGAACTTAAATCAGCAGATGGAAACAAGGCATCTAAGAGGGCAGGGTCTTACAGAAGAAGCCGTGCAGCTGAAGTGCATAATCTATCAGAAAGGAGACGAAGAGATAGGATCAATGAGAAGATGAAGGCACTGCAGCAACTGATACCTAACAGTAACAAGACAGACAAAGCATCAATGTTAGATGAGGCAGTCGAATACTTGAAATCGCTTCAGTTACAGCTTCAGGTAATGTGGATGGGGGCTGGTATGACACCAATGATGTTTCCAGGAATTCAGCACTATATGTCACAAATGAGTATGGGAATGACTGCACCTTCTTTGCCTTCTATTCACCATTCAATGCAATTACCGAGAGTACCACATGATCAGTCCATATCTGTAGCTCAGATACCAAACCAGACTGTGATGTCCCAAAATCCAGTTTTGGATGCGTTTAATTACCAAAATCAGATGCAAAACCCATGCCTTTCAGAGCAATATGCACGTTACATGGCTTATCATCTTATGCAAAGTGCCTCCCAGCCAATGTATGCATACAGATATGGTTCCCAGCCAGCACAACATACTCAAACAATTGCACCCAGCAATAACAACAGTGGACCCGGGAGTGGAGCAGCTAATATTGATAATGCTGTGAGTGGCAAAATTGGTTCTTCCACCTTTAACTGA	1578	0.4297	MNSSIPGWNFESETFVTNQKKPIGPEGELVELLWQNGQVVMHSQTHRKPVVNSSDLRQVHKTDRSTLRTSGPRGNSPNLSHQDETVSWIQYPLEDPLEQEFYSNLLSELAAPCEVESYKPFEQLEEGKSAKEFQGNPMPAPRFQVPDSSQKINDFGGTRKVQKISHFSTPPIVSSASAGAQFREKVNANLSQSKARECSVMTVGSSHCGSNHILQDPDVSRASSNGVWTTTLSAEPEAVRDCVKRTIPRSDKGKSEMVEPTLTSSSGGSGSSIGRTCSLSTRNHSRKRKGTDAEASEEQSEATELKSADGNKASKRAGSYRRSRAAEVHNLSERRRRDRINEKMKALQQLIPNSNKTDKASMLDEAVEYLKSLQLQLQVMWMGAGMTPMMFPGIQHYMSQMSMGMTAPSLPSIHHSMQLPRVPHDQSISVAQIPNQTVMSQNPVLDAFNYQNQMQNPCLSEQYARYMAYHLMQSASQPMYAYRYGSQPAQHTQTIAPSNNNSGPGSGAANIDNAVSGKIGSSTFN	525

Showing 1 to 1 of 1 entries

Previous1Next

Annotation information

Show entries

Search:

Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Gabi4184g00036	525	CDD	bHLH_AtPIF_like	324	387	IPR047265	-
Gabi4184g00036	525	SUPERFAMILY	HLH, helix-loop-helix DNA-binding domain	322	389	IPR036638	GO:0046983
Gabi4184g00036	525	PANTHER	TRANSCRIPTION FACTOR PIF3	14	491	IPR044273	GO:0003700\|GO:0006355
Gabi4184g00036	525	MobiDBLite	consensus disorder prediction	257	280	-	-
Gabi4184g00036	525	FunFam	Basic helix-loop-helix transcription factor	319	382	-	-
Gabi4184g00036	525	Coils	Coil	330	350	-	-
Gabi4184g00036	525	SMART	finulus	330	379	IPR011598	GO:0046983
Gabi4184g00036	525	MobiDBLite	consensus disorder prediction	53	67	-	-
Gabi4184g00036	525	MobiDBLite	consensus disorder prediction	285	311	-	-
Gabi4184g00036	525	MobiDBLite	consensus disorder prediction	68	83	-	-

Showing 1 to 10 of 17 entries

Previous1 2Next

Duplication type information

Show entries

Search:

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gabi4184g00036	Gabi-Chr4184	264531	268701	Dispersed/Tandem

Showing 1 to 1 of 1 entries

Previous1Next

Functional genes information

Show entries

Search:

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gabi4184g00036	1	502	Basic Helix-Loop-Helix Transcription Factor Gene Family	AT3G59060	35.701	2.67e-62	209

Showing 1 to 1 of 1 entries

Previous1Next

Transcription factors information

Show entries

Search:

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	bHLH	Gabi4184g00036		HLH	3.5e-15	No_clan

Showing 1 to 1 of 1 entries

Previous1Next

Pathway information

Show entries

Search:

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gabi4184g00036	K16189		-	gmx:100811345	734.561

Showing 1 to 1 of 1 entries

Previous1Next