Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4184g00035 ATGAACAGCAGTATTCCAGGTTGGAATTTTGAGAGTGAGACCTTTGTCACCAATCAAAAGAAACCCATAGGGCCAGAAGGAGAACTTGTAGAGCTCCTATGGCAAAATGGGCAAGTAGTTATGCATAGCCAAACACATAGAAAACCAGTTGTGAATTCATCTGACTTGAGACAAGTTCACAAAACTGATCGATCAACATTAAGGACTAGTGGGCCACGTGGGAACTCACCTAACTTGAGTCATCAAGATGAGACAGTCTCATGGATCCAATACCCTCTTGAGGATCCATTGGAACAAGAATTCTATTCAAACCTTTTATCTGAGCTAGCAGCACCATGTGAAGTTGAGTCTTACAAGCCATTCGAGCAATTGGAAGAGGGAAAGTCTGCCAAAGTTGTTGCCTCTAGTTCCCCTCTCTCAACTTCAATTTTACAAGCACCTAATAATAATATGAAACCCTCTTGTGTTCAGGAATTCCAAGGAAATCCCATGCCTGCTCCAAGATTTCAGGTTCCTGATTCATCTCAGAAAATCAATGACTTTGGTGGAACACGAAAGGTCCAAAAAATTTCTCACTTTTCAACACCCCCTATTGTTTCTTCAGCATCTGCTGGTGCACAGTTTAGAGAGAAAGTTAATGCTAATCTATCACAAAGTAAGGCCAGAGAGTGCTCAGTGATGACAGTTGGTTCAAGTCACTGTGGCAGCAATCACATCCTTCAGGACCCAGATGTGAGTAGGGCATCAAGTAATGGTGTTTGGACTACTACTTTATCTGCTGAGCCTGAAGCTGTTAGAGATTGTGTCAAGAGAACAATTCCTCGGAGTGATAAAGGAAAATCAGAGATGGTGGAACCAACTCTAACTTCATCTTCTGGTGGCTCAGGCAGTAGTATTGGAAGAACTTGTTCCCTATCAACAAGAAATCATAGCCGAAAGAGAAAAGGGACAGATGCAGAAGCATCAGAGGAACAAAGTGAGGCCACAGAACTTAAATCAGCAGATGGAAACAAGGCATCTAAGAGGGCAGGGTCTTACAGAAGAAGCCGTGCAGCTGAAGTGCATAATCTATCAGAAAGGAGACGAAGAGATAGGATCAATGAGAAGATGAAGGCACTGCAGCAACTGATACCTAACAGTAACAAGACAGACAAAGCATCAATGTTAGATGAGGCAGTCGAATACTTGAAATCGCTTCAGTTACAGCTTCAGGTAATGTGGATGGGGGCTGGTATGACACCAATGATGTTTCCAGGAATTCAGCACTATATGTCACAAATGAGTATGGGAATGACTGCACCTTCTTTGCCTTCTATTCACCATTCAATGCAATTACCGAGAGTACCACATGATCAGTCCATATCTGTAGCTCAGATACCAAACCAGACTGTGATGTCCCAAAATCCAGTTTTGGATGCGTTTAATTACCAAAATCAGATGCAAAACCCATGCCTTTCAGAGCAATATGCACGTTACATGGCTTATCATCTTATGCAAAGTGCCTCCCAGCCAATGTATGCATACAGATATGGTTCCCAGCCAGCACAACATACTCAAACAATTGCACCCAGCAATAACAACAGTGGACCCGGGAGTGGAGCAGCTAATATTGATAATGCTGTGAGTGGCAAAATTGGTTCTTCCACCTTTAACTGA 1656 0.4275 MNSSIPGWNFESETFVTNQKKPIGPEGELVELLWQNGQVVMHSQTHRKPVVNSSDLRQVHKTDRSTLRTSGPRGNSPNLSHQDETVSWIQYPLEDPLEQEFYSNLLSELAAPCEVESYKPFEQLEEGKSAKVVASSSPLSTSILQAPNNNMKPSCVQEFQGNPMPAPRFQVPDSSQKINDFGGTRKVQKISHFSTPPIVSSASAGAQFREKVNANLSQSKARECSVMTVGSSHCGSNHILQDPDVSRASSNGVWTTTLSAEPEAVRDCVKRTIPRSDKGKSEMVEPTLTSSSGGSGSSIGRTCSLSTRNHSRKRKGTDAEASEEQSEATELKSADGNKASKRAGSYRRSRAAEVHNLSERRRRDRINEKMKALQQLIPNSNKTDKASMLDEAVEYLKSLQLQLQVMWMGAGMTPMMFPGIQHYMSQMSMGMTAPSLPSIHHSMQLPRVPHDQSISVAQIPNQTVMSQNPVLDAFNYQNQMQNPCLSEQYARYMAYHLMQSASQPMYAYRYGSQPAQHTQTIAPSNNNSGPGSGAANIDNAVSGKIGSSTFN 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4184g00035 551 MobiDBLite consensus disorder prediction 517 551 - -
Gabi4184g00035 551 MobiDBLite consensus disorder prediction 53 67 - -
Gabi4184g00035 551 MobiDBLite consensus disorder prediction 311 337 - -
Gabi4184g00035 551 FunFam Basic helix-loop-helix transcription factor 345 408 - -
Gabi4184g00035 551 SMART finulus 356 405 IPR011598 GO:0046983
Gabi4184g00035 551 MobiDBLite consensus disorder prediction 68 83 - -
Gabi4184g00035 551 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 348 415 IPR036638 GO:0046983
Gabi4184g00035 551 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 350 399 IPR011598 GO:0046983
Gabi4184g00035 551 MobiDBLite consensus disorder prediction 346 363 - -
Gabi4184g00035 551 MobiDBLite consensus disorder prediction 44 83 - -
Gabi4184g00035 551 CDD bHLH_AtPIF_like 350 413 IPR047265 -
Gabi4184g00035 551 MobiDBLite consensus disorder prediction 283 306 - -
Gabi4184g00035 551 MobiDBLite consensus disorder prediction 271 363 - -
Gabi4184g00035 551 Gene3D - 346 406 IPR036638 GO:0046983
Gabi4184g00035 551 PANTHER TRANSCRIPTION FACTOR PIF3 14 517 IPR044273 GO:0003700|GO:0006355
Gabi4184g00035 551 Coils Coil 356 376 - -
Gabi4184g00035 551 Pfam Helix-loop-helix DNA-binding domain 354 400 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4184g00035 Gabi-Chr4184 264531 268701 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4184g00035 7 519 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G43010 35.917 1.52e-60 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gabi4184g00035 HLH 3.7e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4184g00035 K16189 - gmx:100811777 757.673