Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4184g00027 ATGGGAATTGATCCTTTGAAGACATTTTTGGTCCTTGCCATGCAAGTGGTTGCAAAGATGACTAAAGCAAAGTGGAACTGCTTCAGATTTGAGGTTTACGAAAAGGTGGGATCAAGGTCAGATAGTTTCCCTGGTTGTGCTTTAGTTAGTCTTCAAAGGTTTCGGCATGTCCTGTTTGCTTCTTTCTTCCCAATCCCGTACCGCTACCATTTCAGTCTTGTTCGACAAAATGCTTTCCTTTTCTTCACTTCATCGCCTAGCTTTTCTGAATCAGAAAGTAATCAACTCAAAGATGACAACTTTACGGTCTCTTACCTCATTAACTCATGTGGGTTGTCCCCAGAAACCGCCGCGCGAGTCTCCAAAAATGTGCGATTGAAAACCCTAGATAAACCGAATGCAGTCCTGGATCTTCTCAAGTGTTACGGATTCTACGAATCCCAGATTGCAAAATATGTTCAGACACGACCCATGGTGCTTCTTGCTGATGCAGAGAGGACCCTTTTGCCTAAACTCAAGTTCATCCACTCTATTGGGGTTTCAATTACTGAATTCCCAAAAGTCATCAGTCTTAACCATGCACTCTTGTCAAGGAGCTTGGACAAGTGTGTTATCCCTCGTTATAAGGTCCTCAGGAGTGTTGTTCGTAATGATGAGGAAGTTGTTAGAGCTTTGAAGCGCGGGGCACTTTCTTTAATGCATGGTGATTTGATGAATAATTTGGTTCCAAACATTACTGCTTTGAGAGAGTCTGGTGTGCCTCAAGAATCCATCTCTCACTTGGTGATGTTTCACCCGAATTCGGCATTTCACCAACATTTAAAATTTGTCGAAGCTGTCAAGTTAGCCAAGGAAATGGGGCTTGATCCTTTGAAAATCATTTTTGTCAATGCTATCCATGTGCTTATCAATTTGGACAGAGCAAAGTGGGAATCAAAATTAGAGGCTTGCAAGAAGTGGGGTTGGTCTCGCGAAACCACTCTTTTAGTATTTAGAAAGTATCCAACTTTTATGTCGTGTACAGAGGAGAGGATTACAAAATCAATGAATTTCTTGGTGAAGGATATGGGTTGGCCTTCAGAAGATATTGCTAAATTCCCTGCGGCTCTTGGCTACAACTTGAAGAATAGGACTATCCCCAGATGTGCAGTAATTAAAATCTTGAAATCAAAAGGTCTGCTAAAGAATCATTTAGGTTTAAGTTCCTTTTTGTGCAAGAGCGAGGAAATTTTTTTGGAGACGTTTGTGACTAAATTTCTGGAAGATGTGCCTCTCCTACTGGATGTTTATCGAGGTTTGATTGATCATCAAGATGTACTATAG 1323 0.4119 MGIDPLKTFLVLAMQVVAKMTKAKWNCFRFEVYEKVGSRSDSFPGCALVSLQRFRHVLFASFFPIPYRYHFSLVRQNAFLFFTSSPSFSESESNQLKDDNFTVSYLINSCGLSPETAARVSKNVRLKTLDKPNAVLDLLKCYGFYESQIAKYVQTRPMVLLADAERTLLPKLKFIHSIGVSITEFPKVISLNHALLSRSLDKCVIPRYKVLRSVVRNDEEVVRALKRGALSLMHGDLMNNLVPNITALRESGVPQESISHLVMFHPNSAFHQHLKFVEAVKLAKEMGLDPLKIIFVNAIHVLINLDRAKWESKLEACKKWGWSRETTLLVFRKYPTFMSCTEERITKSMNFLVKDMGWPSEDIAKFPAALGYNLKNRTIPRCAVIKILKSKGLLKNHLGLSSFLCKSEEIFLETFVTKFLEDVPLLLDVYRGLIDHQDVL 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4184g00027 440 PANTHER CGI-12 PROTEIN-RELATED 100 417 IPR003690 GO:0003690|GO:0006355
Gabi4184g00027 440 Gene3D Transcription termination factor 3, mitochondrial 114 235 IPR038538 -
Gabi4184g00027 440 Gene3D Transcription termination factor 3, mitochondrial 236 423 IPR038538 -
Gabi4184g00027 440 SMART mt_12 186 217 IPR003690 GO:0003690|GO:0006355
Gabi4184g00027 440 SMART mt_12 71 113 IPR003690 GO:0003690|GO:0006355
Gabi4184g00027 440 SMART mt_12 150 181 IPR003690 GO:0003690|GO:0006355
Gabi4184g00027 440 SMART mt_12 328 359 IPR003690 GO:0003690|GO:0006355
Gabi4184g00027 440 SMART mt_12 360 394 IPR003690 GO:0003690|GO:0006355
Gabi4184g00027 440 FunFam Mitochondrial transcription termination factor-like 200 423 - -
Gabi4184g00027 440 Pfam mTERF 136 349 IPR003690 GO:0003690|GO:0006355
Gabi4184g00027 440 Pfam mTERF 301 411 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4184g00027 Gabi-Chr4184 183487 186809 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Gabi4184g00027 mTERF 2.5e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4184g00027 K15031 - gmx:100786641 380.948