Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4184g00022 ATGTTTGGGGTCATGGATAATGCAAACGAAGCATCATCATCCTTGAGTTTTGCATCATCTCTCTTGTCAAATGGTTCTAGTAATCACAACATATCTTCCTCCACCAACAATGAGCATGTAGCAAATATTGACATTTTGAGTCTGAGTAAGCTCAGTGGATGCCTTGAGAAGTTGTTGACCGATGCTGATTATGATTATTGTGACGCTGAGATTCTTGTTGAAGGCATCCCTGTGGGTATTCATCGCTGTATATTGGCTTCACGTAGTCAGTTTTTTCATGACCTTTTTAAGAAAGGAAATGATGGATCAGTGAAGGAAGGAAAACCAAGGTATCTCATGTCAGCTTTGGTGCCTTATGGCACAGTTGGATATGAAGCTTTCCTTGTTTTCTTGCATTATTTGTATACTGGAAAGCTAAAGCCTTCACCACCAGAAGTTACAACATGTGTTGATGAAGCATGTATCCATGATGCTTGCCGCCCTGCTATCAATTATGCTTTGGAACTATTGTATGCTTCTGCCACTTTTCAGATGAAAGAGCTGGTTTTGCTTTTCCAGCGACGTCTCCTAAATTTTGTTGAGAAGGCTCTTGTGGAAGATGTCATTCCTATTCTTATGGCTTCCTTTCACTGCCAACTAAGCCAGCTTCGCTCTCAATGCATTCAGAGAGTAGCAAGGTCTGACCTTGACAGCATATCTTTGGAAAAAGAACTCCCTCATGAAGTTGTGACTGAAATCAAGTCACTCCAAGTCCAATCTCAACCAGAATCCGCACCTGAAGCAATGGAAGTGGAACCTTCAAATGATAAGAGTATCAGGAAAATCCATAAAGCATTGGACTCTGATGATGTTGAGCTACTTAAGCTTCTTCTAAATGAGTCTAGTGTCACTCTAGATGATGCCAATGCTTTACACTATGCCTGTGCCTATAGTGATTCTAAGATTGTTCAAGAAGTTCTTTCTCTAGGCTCGGCTGATGTTAGCCTTAGAAATCCACGAGGATACACGGTTCTTCATGTGGCTGCAAGACGAAAGGATCTATCCATTTTGGTAGCATTGCTGAAAAAAGGGTCATGTGTATCAGATACCACTCCGGATGGACAAAATGCTCTTTCAATTTGTCAGAGGTTGACAAGACGCAAGGATTACCATGAGAAAACAGTGCAGGGGAAGGAATCTAACAAGGACAGGCTCTGTGTTGATGTCTTGGAGAGAGAGATCAGAAGGAATTCTATGTCTGTGAATATGTCTTTTTCGTCACTGTTAACTACTGATGATTTGCACATGAGACTGGGAATCTTTGAAAATAGAGTTGCAGTTGCTAGGATGCTGTTTCCTGCTGAGGCTAGGGTAGCCATTGAGAATGCTGAGGCAGATTCAACATCACTGTACGCAAGGTCATCAGCTTTGAAGGGCCCAAGTGGCATTCTAAAAGAAGTAGACCTAAATGAAACCCCTTCTGTTCGAACCAGAAAACTACAGTTAAGATTGCATGCCCTTCAAAAAACAGTTGAGAATGGCAAGCGCTTCTTTCCACATTGTTCTGAGGTGCTTGATAAGTTTCTGGACGACGAGATGCCTGATGTTTTCTTCCTAGAGAAGGGCACTGAAGAAGAGCAAATAATCAAGAAAGCACGCTTCCAGGAACTTAAAGATGATGTGCAGAAGGCATTTCATAAGGATATGGCTGAAAATAACCATACAGGTTTTTCATCTTCAGTGTCTTCTGCATCATCCTCATCTCGTAGGGATGGTCTTAGTCATAAAGTGAGGAAAAAATGA 1782 0.4164 MFGVMDNANEASSSLSFASSLLSNGSSNHNISSSTNNEHVANIDILSLSKLSGCLEKLLTDADYDYCDAEILVEGIPVGIHRCILASRSQFFHDLFKKGNDGSVKEGKPRYLMSALVPYGTVGYEAFLVFLHYLYTGKLKPSPPEVTTCVDEACIHDACRPAINYALELLYASATFQMKELVLLFQRRLLNFVEKALVEDVIPILMASFHCQLSQLRSQCIQRVARSDLDSISLEKELPHEVVTEIKSLQVQSQPESAPEAMEVEPSNDKSIRKIHKALDSDDVELLKLLLNESSVTLDDANALHYACAYSDSKIVQEVLSLGSADVSLRNPRGYTVLHVAARRKDLSILVALLKKGSCVSDTTPDGQNALSICQRLTRRKDYHEKTVQGKESNKDRLCVDVLEREIRRNSMSVNMSFSSLLTTDDLHMRLGIFENRVAVARMLFPAEARVAIENAEADSTSLYARSSALKGPSGILKEVDLNETPSVRTRKLQLRLHALQKTVENGKRFFPHCSEVLDKFLDDEMPDVFFLEKGTEEEQIIKKARFQELKDDVQKAFHKDMAENNHTGFSSSVSSASSSSRRDGLSHKVRKK 593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4184g00022 593 FunFam Regulatory protein NPR3 41 225 - -
Gabi4184g00022 593 SUPERFAMILY Ankyrin repeat 272 376 IPR036770 -
Gabi4184g00022 593 FunFam regulatory protein NPR3-like 267 407 - -
Gabi4184g00022 593 SMART ANK_2a 299 329 IPR002110 GO:0005515
Gabi4184g00022 593 SMART ANK_2a 333 362 IPR002110 GO:0005515
Gabi4184g00022 593 Pfam BTB/POZ domain 65 181 IPR000210 GO:0005515
Gabi4184g00022 593 PANTHER REGULATORY PROTEIN NPR3 27 585 IPR044292 GO:0009862|GO:2000022|GO:2000031
Gabi4184g00022 593 Gene3D - 267 471 IPR036770 -
Gabi4184g00022 593 ProSiteProfiles BTB domain profile. 67 143 IPR000210 GO:0005515
Gabi4184g00022 593 Pfam Ankyrin repeat 334 361 IPR002110 GO:0005515
Gabi4184g00022 593 Pfam Domain of unknown function (DUF3420) 228 276 IPR024228 -
Gabi4184g00022 593 SMART BTB_4 67 193 IPR000210 GO:0005515
Gabi4184g00022 593 MobiDBLite consensus disorder prediction 565 583 - -
Gabi4184g00022 593 MobiDBLite consensus disorder prediction 559 593 - -
Gabi4184g00022 593 SUPERFAMILY POZ domain 52 191 IPR011333 -
Gabi4184g00022 593 ProSiteProfiles Ankyrin repeat profile. 333 365 IPR002110 GO:0005515
Gabi4184g00022 593 ProSiteProfiles Ankyrin repeat region circular profile. 333 358 - -
Gabi4184g00022 593 CDD BTB_POZ_NPR_plant 50 193 - -
Gabi4184g00022 593 Pfam NPR1/NIM1 like defence protein C terminal 375 576 IPR021094 -
Gabi4184g00022 593 Gene3D Potassium Channel Kv1.1; Chain A 31 225 IPR011333 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4184g00022 Gabi-Chr4184 164280 168215 Dispersed/Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Gabi4184g00022 NPR1_like_C 1.9e-81 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4184g00022 K14508 - gmx:100816582 900.968