LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gabi4184g00014	ATGGCAAAAAATGGGGAAGAGTCATGTAGTTTTACCTATGATGTTTTCCTTAGTTTTAGAGGTGAAGATACACGGCACACATTTATAGGACATTTTCGTAAAGAGTTGCGCCGTAAGGGAATTAACGCTTTTGTGGATGATGAGAATCTGAGGATAGGGGAAGGTATTTCACCTGCCCTTTGCAAAGCCATTGAAGAATCTAAGATTATGATCATTGTGTTTTCTGAGAATTATGCATCTTCCACATGGTGCCTTGATGAACTTGACAAGATCCTAGACTGTATCAAGAGGAACAACAAACAACTTGTTTTCCCAATTTTTTACCATGTAGAACCTTCAGATGTAAGGCATCAGAGAAATCATTACAGGGAAGCCATGAATGCACACGAGGATAGGTTTGGCAAAGACTCAGAGAGAGTGCAGGCATGGAGATCAGCTTTGTCTGAAGTAGCTAACTTAAAAGGCCACCATATTAGTTCTGGGTATGAGATCTATGTTAATATAGGTCCTAAACCTTTACATATTGATCAGAACCTAGTTGGACTTGAGTCACGCACAGAAGAGGTGAAGTCACTTTTAGACATGAAGCCTAATGATGACACTGTATGCATGTTGGGCATATATGGAGCTGGTGGAATAGGGAAAACAGCCCTTGCACAAGCTTTGTATAACAAGATTGCCCACCAATTCGAAGCCGCAAGTTTTCTTGCCAATGTTAGAGAGAAATCAAACAAAATCAATCGTATTGAAGATCTACAGAAAACACTTTTATCAGAGATGTTGGAGGAGTTGGAAACGGAGTTGGGCAGTACAAGTAAAGGAATCTATGAAATAAAACGCAAGCTTCACCGTAAGAAAGTTCTTTTGGTTCTTGATGATGTTGATGACATAGGAATGTTAGAAAAATTAGCAGGAGGATGTGATTGGTTTGGTTCAGGTAGCAGGGTCATTATAACAACAAGGGACAAAGGTTTGCTAATTGCTCATCAAGTTGAAAAGATTTATAAAATGACAGAACTTAATGATCTGCATTCCCTTGAGCTCTTTTGTTGGAATGCCTTCAAAAAGAGCCATCCTCCAACAGGTTATGAAGATTTGTCTTCTCGTGCAGTTGGTTATGCACAGGGTCTTCCACTGGCTTTAAAAGTAATAGGCTCTGATTTGGCTATGGAACAAAGTTTAGATGCTTGGGAATGTGCATTGAAAGAATACGAGAGGATTCCAAATAAGAAGATTCAAAACGTGCTCAAAATAAGCTTTGATAGATTGGAGGAACATGCTCAGCAGGTTTTCCTAGACATAGCTTGCTTCTTCAAAGGGGAGAGAATAGAGTCTATTACAAAGATACTAGAGGACTTCGAATTGAGACTTGATAATTGTAGGAACCTAACTGAGGTTCATGAATCTGTTGGATTTCTCAAAAATCTTCTTCACTTAAGTGTTTCGCAATGCACCAAACTCAGAAATTTCCTGCAAAGAATGTTTCTGCCATCTCTGGAAGTCCTTGATCTTAATTTATGCATAAGACTTGAACACTTCCCAGATGTAGTGAAAAAGATGAATAAGCCATTGAAGATTTATATGATAAATACTGCTGTTAAGGAACTGCCAGATTCCGTTGGTAATCTTATTGGGCTTGTTTGTATAGATATGCCAAGTAGCAGGAAACTCAGATATCTACCTAGTAGCTTATTCATGTTGCCAAATGTTGTTGCCTTTAAAATGGGAGGATGTTCTCAACTTCGAGAATCCTTCACATGGTTCATAGGGGGTCCTTCAGCAGCAGAAGGTCGTTCACCATTACAAACATTGTATTTCGAAAATGGTGGTTTGTCAGATGAAGATCTTCATGCAGTTCTCAACTGTTTTTCAAAATTAGAAGAGTTGATTGCATCGGAAAACAATTTTGTATCTCTTCCTGCTTGCATTAAAGAATCTGTTCACTTGACAAGTCTCGATGTGAGTGTTTGCAAGAATCTTAAAAAAATTCCTGAATGCACTAACTTGAGAATTCTTAATGTCCATCGTTGTGGGAAGCTTGAGGACATTTCAGATTTGCCATCTACTATTCAGAAAGTAGATGCAAGATACTGCTTCTCTTTAACTCGAGAGACGTCAACCATGTTATGGTCTCAGGTGTCAAAAGAGATACGTGGATTAGAAGTTGTGATTGTGAATGAAATGGCAAAACAATCTCGTAGGCAACTTGTTGAGCTCCACTTGGTTATCAATGGTCAATGTGTGCCTCGCAAAGGCTATTACAACTTCAGAATTGCAGCAGATCATGTGTTACTTTGTGATCTAAGACTTTTGTTTAGCAATGAGGAGTGGCATGGCCTTGATGCGTTTCTTGAGCATGATTGGAACCTAGTGCAGATTTCATATGAAGCCACCTTAAGTTGTTGGGGAGTTTTTGTGTACAAACAAGGAACCAAAGTCGATGATGTCAAATTCATGTGTCCTGATCCTAAGTACTCAGATATAGCTAACATATCACAGACAATAATTCCTACAAGGGATTCTAGGATGGAACAAATGAAGATGATAGAGAGCTTAGGTCTTGATCAAATTTTTGATGGAATGTTGATGGAATCCATGGGCCTCAAAGAACGATGGGGTTTTGCCTATGAAAATTTTGATATAGAGCAACATCAAGTTCTATTGGGAGGTTTGAAGGAGATATCGAGGCAGGCTAAGGATGTATTAGAATCCAATCGACCTTCGGAGAAACCTTGTGGAACAGGATCAGCTCTAGAAGATAAATACTCCATCCTTGCAGCGTGGCTAGAGATTAATAATAAAATTGATGATGAGGAACGTGAGCCTTCAAACTTTTGGGTTGAATCAAAGCCTCCTATCGATGTAGGAGAAGCTTCAAGCTCTGGCCATCAGGGAAGTGGCAGCGATCCCCAACAGCAAGATAGAATGATCGGAATATTTTGGGAGGGAATGGAGGATGGACTTCTTGAAGCACAGAATAGCTTTCCTTCTCTAGATATACAGACAACCATGTGTGCTGCCTTAAACAAGGGTAATAGGGTTGCATGGTTACTCCCAGAGTCAGAGGTAGAACACCATGAAGTTGAAGGTCTACTACTACTACCCCAAGTAGAAAAGAAGATATACATAGAAGGAATCTTCAATGGACTCCTGGAAGCAAAGAAAAGCTTTCCTACTCTTGATATAGACGCAATACTAAATACCGTGTTAAGTAGGGGGAGCCATAAAGGACCTATTCAAGCACCACCTGTGATTCAACAAGTACTGGATGGGACTACAGTGATGGTTCCTAGCTCTGAGGATCCTTTGTTGTAA	3315	0.3967	MAKNGEESCSFTYDVFLSFRGEDTRHTFIGHFRKELRRKGINAFVDDENLRIGEGISPALCKAIEESKIMIIVFSENYASSTWCLDELDKILDCIKRNNKQLVFPIFYHVEPSDVRHQRNHYREAMNAHEDRFGKDSERVQAWRSALSEVANLKGHHISSGYEIYVNIGPKPLHIDQNLVGLESRTEEVKSLLDMKPNDDTVCMLGIYGAGGIGKTALAQALYNKIAHQFEAASFLANVREKSNKINRIEDLQKTLLSEMLEELETELGSTSKGIYEIKRKLHRKKVLLVLDDVDDIGMLEKLAGGCDWFGSGSRVIITTRDKGLLIAHQVEKIYKMTELNDLHSLELFCWNAFKKSHPPTGYEDLSSRAVGYAQGLPLALKVIGSDLAMEQSLDAWECALKEYERIPNKKIQNVLKISFDRLEEHAQQVFLDIACFFKGERIESITKILEDFELRLDNCRNLTEVHESVGFLKNLLHLSVSQCTKLRNFLQRMFLPSLEVLDLNLCIRLEHFPDVVKKMNKPLKIYMINTAVKELPDSVGNLIGLVCIDMPSSRKLRYLPSSLFMLPNVVAFKMGGCSQLRESFTWFIGGPSAAEGRSPLQTLYFENGGLSDEDLHAVLNCFSKLEELIASENNFVSLPACIKESVHLTSLDVSVCKNLKKIPECTNLRILNVHRCGKLEDISDLPSTIQKVDARYCFSLTRETSTMLWSQVSKEIRGLEVVIVNEMAKQSRRQLVELHLVINGQCVPRKGYYNFRIAADHVLLCDLRLLFSNEEWHGLDAFLEHDWNLVQISYEATLSCWGVFVYKQGTKVDDVKFMCPDPKYSDIANISQTIIPTRDSRMEQMKMIESLGLDQIFDGMLMESMGLKERWGFAYENFDIEQHQVLLGGLKEISRQAKDVLESNRPSEKPCGTGSALEDKYSILAAWLEINNKIDDEEREPSNFWVESKPPIDVGEASSSGHQGSGSDPQQQDRMIGIFWEGMEDGLLEAQNSFPSLDIQTTMCAALNKGNRVAWLLPESEVEHHEVEGLLLLPQVEKKIYIEGIFNGLLEAKKSFPTLDIDAILNTVLSRGSHKGPIQAPPVIQQVLDGTTVMVPSSEDPLL	1104

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gabi4184g00014	1104	FunFam	Disease resistance protein (TIR-NBS-LRR class)	9	165	-	-
	Gabi4184g00014	1104	Pfam	NB-ARC domain	185	414	IPR002182	GO:0043531
	Gabi4184g00014	1104	MobiDBLite	consensus disorder prediction	940	972	-	-
	Gabi4184g00014	1104	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	172	434	IPR027417	-
	Gabi4184g00014	1104	PRINTS	Disease resistance protein signature	281	295	-	-
	Gabi4184g00014	1104	PRINTS	Disease resistance protein signature	494	510	-	-
	Gabi4184g00014	1104	PRINTS	Disease resistance protein signature	374	388	-	-
	Gabi4184g00014	1104	PRINTS	Disease resistance protein signature	204	219	-	-
	Gabi4184g00014	1104	Gene3D	Ribonuclease Inhibitor	436	587	IPR032675	-
	Gabi4184g00014	1104	ProSiteProfiles	TIR domain profile.	11	151	IPR000157	GO:0007165
	Gabi4184g00014	1104	SUPERFAMILY	RNI-like	454	722	-	-
	Gabi4184g00014	1104	Gene3D	-	339	424	IPR042197	-
	Gabi4184g00014	1104	Gene3D	Ribonuclease Inhibitor	590	741	IPR032675	-
	Gabi4184g00014	1104	SUPERFAMILY	Toll/Interleukin receptor TIR domain	5	155	IPR035897	-
	Gabi4184g00014	1104	Pfam	TIR domain	13	151	IPR000157	GO:0007165
	Gabi4184g00014	1104	Gene3D	-	7	169	IPR035897	-
	Gabi4184g00014	1104	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	13	692	IPR044974	GO:0006952
	Gabi4184g00014	1104	SMART	till_3	12	153	IPR000157	GO:0007165
	Gabi4184g00014	1104	Gene3D	-	170	335	IPR027417	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gabi4184g00014	Gabi-Chr4184	82890	87843	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gabi4184g00014	457	581	WRKY Transcription Factor Family	AT4G12020	34.400	2.48e-13	73.2

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gabi4184g00014	-		-	gmx:121173506	794.267