Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4184g00012 ATGGAGGAAAATCATTCACACGTTATAAGAAGCTTTCCAAAGTTTGAGATACTCAAGCGTTACAAACAAATGGATGTGGCCAAGTTACATAACTCTGATGACAAGAAAGAAGATGAAGTAGTACTTCCTGGTTTTAGATTCCATCCAACAGATGAAGAACTTGTTGGGTTCTATCTGCGGCGAAAGGTGGAGAAGAAGCCTCTTCGAATTGAACTCATCAAACAGATTGACATCTACAAATATGATCCGTGGGATCTTCCAAAGAGTTCTGTGGGGGAGAAAGAATGGTATTTCTTCTGCATAAGAGGGAGAAAATACAGGAACAGCATAAGGCCTAACAGGGTAACAGGGTCTGGATTCTGGAAAGCCACAGGGATTGACAAGCCTATATACAGTGTTAAAGAAACCCATGAATGCATTGGCCTCAAGAAATCATTGGTTTACTACCGCGGAAGTGCAGGGAAAGGCACCAAAACTGATTGGATGATGCATGAGTTTCGCCTCCCACCCAACGGAAAAACTAGCAATAATCCACAACCTAATGCTAGCAATGATGTTCAACAAGCTGAAGTGTGGACGCTATGCAGAATATTCAAACGAATCCCATCTTACAAGAAGTACACACCAAATTTGAAAGACTCGGAACCAGTCACCAAGCCAAACCCCACTAATTCTTCAACTTCCAAAACATGTAGCTTAGAATCTGACAACAGCAAGTCGTACTTGACTTTCACAGACTCTGCAGTCATTCACCAAATTGAAAGGAAACCTGTTATTGGACAAGTTGACGAAAGGAACAACCACTTATTTCAAGGTCAGTTAGGCAATGTAGCTGCTCAGCCTCCAACAACGTTGTCTTACTCAAGTTTTAATTGGAATCAGAATGTGAATGATGATGCATTTGCAAATGAGAACTGGGATGATCTCAGATCTGTCGTTCAGTTTGCTAATATTGATCCATCCAAGGTTTATGATTGTAAAGAATTAAATAGATTTTAA 999 0.4044 MEENHSHVIRSFPKFEILKRYKQMDVAKLHNSDDKKEDEVVLPGFRFHPTDEELVGFYLRRKVEKKPLRIELIKQIDIYKYDPWDLPKSSVGEKEWYFFCIRGRKYRNSIRPNRVTGSGFWKATGIDKPIYSVKETHECIGLKKSLVYYRGSAGKGTKTDWMMHEFRLPPNGKTSNNPQPNASNDVQQAEVWTLCRIFKRIPSYKKYTPNLKDSEPVTKPNPTNSSTSKTCSLESDNSKSYLTFTDSAVIHQIERKPVIGQVDERNNHLFQGQLGNVAAQPPTTLSYSSFNWNQNVNDDAFANENWDDLRSVVQFANIDPSKVYDCKELNRF 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4184g00012 332 ProSiteProfiles NAC domain profile. 41 200 IPR003441 GO:0003677|GO:0006355
Gabi4184g00012 332 Gene3D NAC domain 50 203 IPR036093 GO:0003677|GO:0006355
Gabi4184g00012 332 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 38 247 - -
Gabi4184g00012 332 MobiDBLite consensus disorder prediction 214 234 - -
Gabi4184g00012 332 SUPERFAMILY NAC domain 39 199 IPR036093 GO:0003677|GO:0006355
Gabi4184g00012 332 Pfam No apical meristem (NAM) protein 43 168 IPR003441 GO:0003677|GO:0006355
Gabi4184g00012 332 MobiDBLite consensus disorder prediction 209 234 - -
Gabi4184g00012 332 FunFam NAC domain-containing protein 35 50 203 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4184g00012 Gabi-Chr4184 62408 66136 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4184g00012 35 200 NAC Transcription Factor Family AT5G39820 62.570 4.41e-77 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Gabi4184g00012 NAM 1.7e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4184g00012 - - gmx:100784323 502.286