Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4184g00011 ATGGAGGAAAATCATTCACACGTTATAAGAAGCTTTCCAAAGTTTGAGATACTCAAGCGTTACAAACAAATGGATGTGGCCAAGTTACATAACTCTGATGACAAGAAAGAAGATGAAGTAGTACTTCCTGGTTTTAGATTCCATCCAACAGATGAAGAACTTGTTGGGTTCTATCTGCGGCGAAAGGTGGAGAAGAAGCCTCTTCGAATTGAACTCATCAAACAGATTGACATCTACAAATATGATCCGTGGGATCTTCCAAAAGAGAGTTCTGTGGGGGAGAAAGAATGGTATTTCTTCTGCATAAGAGGGAGAAAATACAGGAACAGCATAAGGCCTAACAGGGTAACAGGGTCTGGATTCTGGAAAGCCACAGGGATTGACAAGCCTATATACAGTGTTAAAGAAACCCATGAATGCATTGGCCTCAAGAAATCATTGGTTTACTACCGCGGAAGTGCAGGGAAAGGCACCAAAACTGATTGGATGATGCATGAGTTTCGCCTCCCACCCAACGGAAAAACTAGCAATAATCCACAACCTAATGCTAGCAATGATGTTCAACAAGCTTGTCTTTGTTTCTATGCCCTTTATGGGGGGGTTTGCACTTTGCAGGAAGTGTGGACGCTATGCAGAATATTCAAACGAATCCCATCTTACAAGAAGTACACACCAAATTTGAAAGACTCGGAACCAGTCACCAAGCCAAACCCCACTAATTCTTCAACTTCCAAAACATGTAGCTTAGAATCTGACAACAGCAAGTCGTACTTGACTTTCACAGACTCTGCAGTCATTCACCAAATTGAAAGGAAACCTGTTATTGGACAAGTTGACGAAAGGAACAACCACTTATTTCAAGGTCAGTTAGGCAATGTAGCTGCTCAGCCTCCAACAACGTTGTCTTACTCAAGTTTTAATTGGAATCAGAATGTGAATGATGATGCATTTGCAAATGAGAACTGGGATGATCTCAGATCTGTCGTTCAGTTTGCTAATATTGATCCATCCAAGGTTTATGATTGTAAAGAATTAAATAGATTTTAA 1047 0.4069 MEENHSHVIRSFPKFEILKRYKQMDVAKLHNSDDKKEDEVVLPGFRFHPTDEELVGFYLRRKVEKKPLRIELIKQIDIYKYDPWDLPKESSVGEKEWYFFCIRGRKYRNSIRPNRVTGSGFWKATGIDKPIYSVKETHECIGLKKSLVYYRGSAGKGTKTDWMMHEFRLPPNGKTSNNPQPNASNDVQQACLCFYALYGGVCTLQEVWTLCRIFKRIPSYKKYTPNLKDSEPVTKPNPTNSSTSKTCSLESDNSKSYLTFTDSAVIHQIERKPVIGQVDERNNHLFQGQLGNVAAQPPTTLSYSSFNWNQNVNDDAFANENWDDLRSVVQFANIDPSKVYDCKELNRF 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4184g00011 348 MobiDBLite consensus disorder prediction 225 249 - -
Gabi4184g00011 348 Gene3D NAC domain 50 219 IPR036093 GO:0003677|GO:0006355
Gabi4184g00011 348 MobiDBLite consensus disorder prediction 230 249 - -
Gabi4184g00011 348 SUPERFAMILY NAC domain 39 215 IPR036093 GO:0003677|GO:0006355
Gabi4184g00011 348 FunFam NAC domain-containing protein 35 50 219 - -
Gabi4184g00011 348 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 38 263 - -
Gabi4184g00011 348 Pfam No apical meristem (NAM) protein 43 169 IPR003441 GO:0003677|GO:0006355
Gabi4184g00011 348 ProSiteProfiles NAC domain profile. 41 216 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4184g00011 Gabi-Chr4184 62408 66139 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4184g00011 35 216 NAC Transcription Factor Family AT5G39820 61.538 2.15e-76 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Gabi4184g00011 NAM 1.1e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4184g00011 - - gmx:100784323 496.123