Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4183g00092 ATGGCCGAAGTGCGAAGAGGCCAAGATAATCAAGGGATTAAGCTCTTTGGCGCAACGATTACGTTGCATGATGGGGAAGTAAACGAGGGAAAAAAGGGAAGCGAAGATCAGACGGCTGAGAAGAGGCCAGAGAAGATCATACCTTGCCCGAGATGCAAGAGCATGGAAACCAAGTTCTGCTACTTCAATAACTATAACGTTAATCAGCCAAGGCATTTCTGCAAGGGCTGCCAGAGGTACTGGACGGCCGGTGGGGCCCTCCGCAACGTCCCAGTAGGGGCCGGCCGGCGGAAGGCCAAGCCACCGTGCCATGGTGCCGATGGATTTCCGGACGGTTGCTTCTATGAAACTTCCGATGATGTCCACAGTTTTGGGTTGGAGAAGGGGTTGGTTTTGGATGAGTGGAACCTTCTCATGCCTCAGAGTGGTTCCCGGCAGCTTTTTCCGGCAAAGCGGCGGAGGACAACCTCAGCTCAGCATCAAGGTCAGTAA 492 0.5366 MAEVRRGQDNQGIKLFGATITLHDGEVNEGKKGSEDQTAEKRPEKIIPCPRCKSMETKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPVGAGRRKAKPPCHGADGFPDGCFYETSDDVHSFGLEKGLVLDEWNLLMPQSGSRQLFPAKRRRTTSAQHQGQ 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4183g00092 163 ProSiteProfiles Zinc finger Dof-type profile. 47 101 IPR003851 GO:0003677|GO:0006355
Gabi4183g00092 163 PANTHER CYCLIC DOF FACTOR 2 31 101 IPR045174 GO:0003700|GO:0006355
Gabi4183g00092 163 ProSitePatterns Zinc finger Dof-type signature. 49 85 IPR003851 GO:0003677|GO:0006355
Gabi4183g00092 163 Pfam Dof domain, zinc finger 45 100 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4183g00092 Gabi-Chr4183 765725 767185 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4183g00092 8 154 C2C2-Dof Transcription Factor Family AT1G29160 55.689 2.12e-53 165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Gabi4183g00092 zf-Dof 5.2e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4183g00092 - - pper:18778392 227.639