Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4183g00091 ATGGCCGAAGTGCGAAGAGGCCAAGATAATCAAGGGATTAAGCTCTTTGGCGCAACGATTACGTTGCATGATGGGGAAGTAAACGAGGGAAAAAAGGGAAGCGAAGATCAGACGGCTGAGAAGAGGCCAGAGAAGATCATACCTTGCCCGAGATGCAAGAGCATGGAAACCAAGTTCTGCTACTTCAATAACTATAACGTTAATCAGCCAAGGCATTTCTGCAAGGGCTGCCAGAGGTACTGGACGGCCGGTGGGGCCCTCCGCAACGTCCCAGTAGGGGCCGGCCGGCGGAAGGCCAAGCCACCGTGCCATGGTGCCGATGGATTTCCGGACGGTTGCTTCTATGAAACTTCCGATGATGTCCACAGTTTTGGGTTGGAGAAGGGGTTGGTTTTGGATGAGTGGAACCTTCTCATGCCTCAGAGTGGTTCCCGGCAGCTTTTTCCGGCAAAGCGGCGGAGGACAACCTCAGGTGCTCAGCATCAAGGTCAGTAA 495 0.5374 MAEVRRGQDNQGIKLFGATITLHDGEVNEGKKGSEDQTAEKRPEKIIPCPRCKSMETKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPVGAGRRKAKPPCHGADGFPDGCFYETSDDVHSFGLEKGLVLDEWNLLMPQSGSRQLFPAKRRRTTSGAQHQGQ 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4183g00091 164 PANTHER CYCLIC DOF FACTOR 2 31 101 IPR045174 GO:0003700|GO:0006355
Gabi4183g00091 164 ProSiteProfiles Zinc finger Dof-type profile. 47 101 IPR003851 GO:0003677|GO:0006355
Gabi4183g00091 164 Pfam Dof domain, zinc finger 45 100 IPR003851 GO:0003677|GO:0006355
Gabi4183g00091 164 ProSitePatterns Zinc finger Dof-type signature. 49 85 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4183g00091 Gabi-Chr4183 765725 767185 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4183g00091 8 160 C2C2-Dof Transcription Factor Family AT1G29160 54.335 1.48e-53 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Gabi4183g00091 zf-Dof 5.3e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4183g00091 - - gmx:100820604 232.261