Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4183g00074 ATGGATAACAAAGCAACAATTCTGATGCAAAGGTATGAACTTGGCCGTATGCTTGGCCAAGGAAACTTCGCCAAGGTTTACCATGGAAGGAACTTGAAGACAGGACAGAGCGTTGCCATCAAAGTATTCAACAAAGAGATGATCATGAGGGTTGGTTTGATGGAGCAAATTAAGCGTGAAATCTCAATCATGCGCCTTGTGAGACACCCCAACATTGTGCAGCTCTATGAGGTCATGGCAAGCAAAACAAAGATATATTTTGCAATGGAATACGTGAAAGGTGGTGAGCTTTTTGACAAAGTGTCCCGAGGGAAGATGAGTGAAGATGTGGCAAGAAAATATTTCCAACAGTTGATTGATGCTGTTGGTTATTGCCACACTAGAGGGGTTTATCACCGTGACCTCAAACCTGAGAACCTTCTCCTTGATGAAAATGGGGACCTCAAAGTTTCAGACTTTGGTTTGAGTGTATTGGTGGAAACAAGGAACAATGATGGCCTTCTTCACACAACTTGTGGTACTCCAGCTTATGTGGCCCCTGAGGTTATCAAGAAGAAAGGCTATGATGGAGCCAAAGCTGATATTTGGTCTTGTGGGGTCATTCTCTATGTTCTATTGGCAGGTTATCTTCCTTTCAATGATAAAAATCTAATGGTAATGTATAGGAAGATTTCCCAAGCAGATTTCAAGTTCCCACAATGGTTTCGTTCAGATGTGAAAAGGCTTCTCTATAGAATCCTTGATTCCAATCCAAGGACAAGAATTAATATGACCAAGATCATGCAGAGCAATTGGTTTAGAAAGGGGTATGAGCAGATTGAAGCACCACCCTTATCCCCTACAAAAAATGCTGAGATTATCTTGGATGTTCAGGCTGCATTTGCTTCATCAAATTCAGATGGTGATAGCTCAACATTAAATGAAGAAGAAAGCCCCATGAAGCCATATTGTTTCAATGCATTTGATCTCATATCACTCTCTTCAGGACTTGATCTTTCTGGTCTTTTTGAGAAAGATAAGAGTGAAAGACAGGAAGCAAGATTCACTACCAAAAAACCACCTTCAATGGTAGTGTCAAAACTTGAAGAGATAGCACAGATAGATGGTAGATTTAAGGTCATGAAGAAAAATGGAATTATTAGTTTGGAAGGAAGCAAGACAGGGCTAAAAAGCCAACTCAGTATAGAAGCTGAAATTTTTGAAGTTACATGTTCCTTTCATATTGTTGAGGTGAGGAAAATTGCTGGAGACACAGTGGAATATAGGAAAGTCTGGGACCAGTACTTCAAGCCTTGTCTAAATGAAATAGTTTGGGCTTGGCAAGGATATGAGGGGCAACAATAG 1344 0.404 MDNKATILMQRYELGRMLGQGNFAKVYHGRNLKTGQSVAIKVFNKEMIMRVGLMEQIKREISIMRLVRHPNIVQLYEVMASKTKIYFAMEYVKGGELFDKVSRGKMSEDVARKYFQQLIDAVGYCHTRGVYHRDLKPENLLLDENGDLKVSDFGLSVLVETRNNDGLLHTTCGTPAYVAPEVIKKKGYDGAKADIWSCGVILYVLLAGYLPFNDKNLMVMYRKISQADFKFPQWFRSDVKRLLYRILDSNPRTRINMTKIMQSNWFRKGYEQIEAPPLSPTKNAEIILDVQAAFASSNSDGDSSTLNEEESPMKPYCFNAFDLISLSSGLDLSGLFEKDKSERQEARFTTKKPPSMVVSKLEEIAQIDGRFKVMKKNGIISLEGSKTGLKSQLSIEAEIFEVTCSFHIVEVRKIAGDTVEYRKVWDQYFKPCLNEIVWAWQGYEGQQ 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4183g00074 447 CDD CIPK_C 319 434 - -
Gabi4183g00074 447 CDD STKc_SnRK3 11 265 - -
Gabi4183g00074 447 Pfam NAF domain 316 375 IPR004041 GO:0007165
Gabi4183g00074 447 FunFam Non-specific serine/threonine protein kinase 313 438 - -
Gabi4183g00074 447 ProSiteProfiles NAF domain profile. 313 337 IPR018451 GO:0007165
Gabi4183g00074 447 Gene3D Transferase(Phosphotransferase) domain 1 2 315 - -
Gabi4183g00074 447 ProSiteProfiles Protein kinase domain profile. 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4183g00074 447 ProSitePatterns Serine/Threonine protein kinases active-site signature. 130 142 IPR008271 GO:0004672|GO:0006468
Gabi4183g00074 447 SUPERFAMILY Protein kinase-like (PK-like) 8 284 IPR011009 -
Gabi4183g00074 447 FunFam Non-specific serine/threonine protein kinase 5 311 - -
Gabi4183g00074 447 SMART serkin_6 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4183g00074 447 FunFam Non-specific serine/threonine protein kinase 3 91 - -
Gabi4183g00074 447 Gene3D Kinase associated domain 1, KA1 316 439 - -
Gabi4183g00074 447 Pfam Protein kinase domain 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4183g00074 447 ProSitePatterns Protein kinases ATP-binding region signature. 18 41 IPR017441 GO:0005524
Gabi4183g00074 447 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 5 423 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4183g00074 Gabi-Chr4183 599592 600950 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4183g00074 1 442 CBL-interacting serine-threonine protein kinases AT5G45820 62.247 0.0 575
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Gabi4183g00074 Pkinase 1.9e-75 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4183g00074 K07198 - gmx:100807927 692.96