Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4183g00072 ATGGCGGACGTTGTTTCCAAGAAGGTAAACACGAACCCCATTAGCAGCAACAAGAAGGAGACACCAAATCTGATACTGGGTCGCTATGAGATTGGGAAGCTCCTTGGCCATGGAACCTTCGCGAAGGTTTACCATGCGAGGAACATCAAAACCGGTGAAGGGGTGGCCATAAAGGTGATCGACAAGGAGAAGATCCTAAAGGGTGGGTTGGTGGCACATATCAAGCGCGAGATCTCGATCCTCCGGCGTGTTCGCCACCCCAACATCGTGCAACTCTTCGAAGTTATGGCCACCAAGACCAAGATCTACTTTGTAATGGAATACGTTCGTGGGGGTGAGCTTTTCAACAAGGTTGCAAAAGGGAGGTTGAAGGAGGAGGTTGCAAGGAAGTACTTTCAGCAGTTGATCTCTGCTGTTGAGTTTTGTCACGCTAGAGGGGTGTTCCATAGGGATCTCAAGCCTGAAAATTTGTTGCTTGATGAGAATGGTAACCTCAAAGTTTCTGATTTTGGGTTGAGTGCGGTGTCTGATCAAATCAGGCAAGATGGGTTGTTCCACACGTTTTGTGGGACTCCTGCTTATGTTGCTCCTGAGGTTTTGGCAAGGAAAGGTTATGATGGTGCAAAGGTTGATCTTTGGTCTTGTGGGGTTGTCTTGTTTGTGTTGATGGCAGGGTATTTGCCATTCCATGACCAGAATGTCATGGCAATGTATAAGAAGATTTACAGAGGTGAATTCAGGTGCCCTAGGTGGTTCTCACCTGACCTCTCTAGGCTCCTCACTAGGCTTCTTGATACCAAGCCCGAGACACGGATGGCTATCCCTGAGATTATGGAGAATAGGTGGTTCAAGAAAGGGTTCAAACAAATTAAGTTTTATGTTGAGGATGATAGGATTAGAAGGAGGAATGCTCCATTGCCAAGACCAGCAAGTTTGAATGCTTTTGACATTATATCATTCTCTCCGGGTTTTGATCTTTCTGGATTGTTTGAGGAAAAAGGGGATGAGGCCAGGTTTGTGACTGCAGCCCCAGTTTCCAAGATCATATCAAAATTGGAGGAAATTGGTCACCTGGTTAGATTTAGTGTAAGGAAAAAAGATTGCAGGGTCAGCTTGGAGGGTACTAGAGAAGGTGTAAAAGGGCCGTTGACAATTGCTGCAGAGATATTTGAATTGACACCTTCTTTGGTTGTGGTTGAGGTGAAGAAAAAAGGAGGGGATAGAGCAGAGTATGAGAGATTTTGTAACGATGAATTGAAACCTGGGCTGCTGAATTTGATGAAGGATGAATCTGCAACTTCTTCTGGCTTGCAGACACCTACTGAGCCTTCCCTAATACGTGTGCTTTCTGAACCTGGGCACAGCATAGCTTCGGATATTGAATCTTCACTCTATGAACCTGCAGATATTGAACCTCCACTCTTTACAGTTACACCTTCTGAGATTTGA 1449 0.4548 MADVVSKKVNTNPISSNKKETPNLILGRYEIGKLLGHGTFAKVYHARNIKTGEGVAIKVIDKEKILKGGLVAHIKREISILRRVRHPNIVQLFEVMATKTKIYFVMEYVRGGELFNKVAKGRLKEEVARKYFQQLISAVEFCHARGVFHRDLKPENLLLDENGNLKVSDFGLSAVSDQIRQDGLFHTFCGTPAYVAPEVLARKGYDGAKVDLWSCGVVLFVLMAGYLPFHDQNVMAMYKKIYRGEFRCPRWFSPDLSRLLTRLLDTKPETRMAIPEIMENRWFKKGFKQIKFYVEDDRIRRRNAPLPRPASLNAFDIISFSPGFDLSGLFEEKGDEARFVTAAPVSKIISKLEEIGHLVRFSVRKKDCRVSLEGTREGVKGPLTIAAEIFELTPSLVVVEVKKKGGDRAEYERFCNDELKPGLLNLMKDESATSSGLQTPTEPSLIRVLSEPGHSIASDIESSLYEPADIEPPLFTVTPSEI 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4183g00072 482 CDD CIPK_C 313 423 - -
Gabi4183g00072 482 Pfam NAF domain 309 365 IPR004041 GO:0007165
Gabi4183g00072 482 FunFam Non-specific serine/threonine protein kinase 309 427 - -
Gabi4183g00072 482 SUPERFAMILY Protein kinase-like (PK-like) 25 298 IPR011009 -
Gabi4183g00072 482 ProSitePatterns Protein kinases ATP-binding region signature. 35 58 IPR017441 GO:0005524
Gabi4183g00072 482 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 23 421 - -
Gabi4183g00072 482 ProSitePatterns Serine/Threonine protein kinases active-site signature. 147 159 IPR008271 GO:0004672|GO:0006468
Gabi4183g00072 482 CDD STKc_SnRK3 28 282 - -
Gabi4183g00072 482 FunFam Non-specific serine/threonine protein kinase 20 108 - -
Gabi4183g00072 482 ProSiteProfiles NAF domain profile. 307 331 IPR018451 GO:0007165
Gabi4183g00072 482 ProSiteProfiles Protein kinase domain profile. 29 283 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4183g00072 482 SMART serkin_6 29 283 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4183g00072 482 FunFam Non-specific serine/threonine protein kinase 19 305 - -
Gabi4183g00072 482 Pfam Protein kinase domain 29 283 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4183g00072 482 Gene3D Transferase(Phosphotransferase) domain 1 19 306 - -
Gabi4183g00072 482 Gene3D Kinase associated domain 1, KA1 309 428 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4183g00072 Gabi-Chr4183 586162 588012 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4183g00072 24 430 CBL-interacting serine-threonine protein kinases AT4G18700 79.727 0.0 722
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Gabi4183g00072 Pkinase 5.3e-74 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4183g00072 - - gmx:100790133 811.601