Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4183g00071 ATGGCGGACGTTGTTTCCAAGAAGGTAAACACGAACCCCATTAGCAGCAACAAGAAGGAGACACCAAATCTGATACTGGGTCGCTATGAGATTGGGAAGCTCCTTGGCCATGGAACCTTCGCGAAGGTTTACCATGCGAGGAACATCAAAACCGGTGAAGGGGTGGCCATAAAGGTGATCGACAAGGAGAAGATCCTAAAGGGTGGGTTGGTGGCACATATCAAGCGCGAGATCTCGATCCTCCGGCGTGTTCGCCACCCCAACATCGTGCAACTCTTCGAAGTTATGGCCACCAAGACCAAGATCTACTTTGTAATGGAATACGTTCGTGGGGGTGAGCTTTTCAACAAGGTTGCAAAAGGGAGGTTGAAGGAGGAGGTTGCAAGGAAGTACTTTCAGCAGTTGATCTCTGCTGTTGAGTTTTGTCACGCTAGAGGGGTGTTCCATAGGGATCTCAAGCCTGAAAATTTGTTGCTTGATGAGAATGGTAACCTCAAAGTTTCTGATTTTGGGTTGAGTGCGGTGTCTGATCAAATCAGGCAAGATGGGTTGTTCCACACGTTTTGTGGGACTCCTGCTTATGTTGCTCCTGAGGTTTTGGCAAGGAAAGGTTATGATGGTGCAAAGGTTGATCTTTGGTCTTGTGGGGTTGTCTTGTTTGTGTTGATGGCAGGGTATTTGCCATTCCATGACCAGAATGTCATGGCAATGTATAAGAAGATTTACAGAGGTGAATTCAGGTGCCCTAGGTGGTTCTCACCTGACCTCTCTAGGCTCCTCACTAGGCTTCTTGATACCAAGCCCGAGACACGGATGGCTATCCCTGAGATTATGGAGAATAGGTGGTTCAAGAAAGGGTTCAAACAAATTAAGTTTTATGTTGAGGATGATAGGGTAGAGATTAGAAGGAGGAATGCTCCATTGCCAAGACCAGCAAGTTTGAATGCTTTTGACATTATATCATTCTCTCCGGGTTTTGATCTTTCTGGATTGTTTGAGGAAAAAGGGGATGAGGCCAGGTTTGTGACTGCAGCCCCAGTTTCCAAGATCATATCAAAATTGGAGGAAATTGGTCACCTGGTTAGATTTAGTGTAAGGAAAAAAGATTGCAGGGTCAGCTTGGAGGGTACTAGAGAAGGTGTAAAAGGGCCGTTGACAATTGCTGCAGAGATATTTGAATTGACACCTTCTTTGGTTGTGGTTGAGGTGAAGAAAAAAGGAGGGGATAGAGCAGAGTATGAGAGATTTTGTAACGATGAATTGAAACCTGGGCTGCTGAATTTGATGAAGGATGAATCTGCAACTTCTTCTGGCTTGCAGACACCTACTGAGCCTTCCCTAATACGTGTGCTTTCTGAACCTGGGCACAGCATAGCTTCGGATATTGAATCTTCACTCTATGAACCTGCAGATATTGAACCTCCACTCTTTACAGTTACACCTTCTGAGATTTGA 1455 0.455 MADVVSKKVNTNPISSNKKETPNLILGRYEIGKLLGHGTFAKVYHARNIKTGEGVAIKVIDKEKILKGGLVAHIKREISILRRVRHPNIVQLFEVMATKTKIYFVMEYVRGGELFNKVAKGRLKEEVARKYFQQLISAVEFCHARGVFHRDLKPENLLLDENGNLKVSDFGLSAVSDQIRQDGLFHTFCGTPAYVAPEVLARKGYDGAKVDLWSCGVVLFVLMAGYLPFHDQNVMAMYKKIYRGEFRCPRWFSPDLSRLLTRLLDTKPETRMAIPEIMENRWFKKGFKQIKFYVEDDRVEIRRRNAPLPRPASLNAFDIISFSPGFDLSGLFEEKGDEARFVTAAPVSKIISKLEEIGHLVRFSVRKKDCRVSLEGTREGVKGPLTIAAEIFELTPSLVVVEVKKKGGDRAEYERFCNDELKPGLLNLMKDESATSSGLQTPTEPSLIRVLSEPGHSIASDIESSLYEPADIEPPLFTVTPSEI 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4183g00071 484 Gene3D Transferase(Phosphotransferase) domain 1 19 307 - -
Gabi4183g00071 484 Gene3D Kinase associated domain 1, KA1 311 430 - -
Gabi4183g00071 484 FunFam Non-specific serine/threonine protein kinase 19 306 - -
Gabi4183g00071 484 ProSitePatterns Protein kinases ATP-binding region signature. 35 58 IPR017441 GO:0005524
Gabi4183g00071 484 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 23 423 - -
Gabi4183g00071 484 ProSitePatterns Serine/Threonine protein kinases active-site signature. 147 159 IPR008271 GO:0004672|GO:0006468
Gabi4183g00071 484 CDD STKc_SnRK3 28 282 - -
Gabi4183g00071 484 ProSiteProfiles NAF domain profile. 309 333 IPR018451 GO:0007165
Gabi4183g00071 484 FunFam Non-specific serine/threonine protein kinase 20 108 - -
Gabi4183g00071 484 ProSiteProfiles Protein kinase domain profile. 29 283 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4183g00071 484 SMART serkin_6 29 283 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4183g00071 484 SUPERFAMILY Protein kinase-like (PK-like) 25 304 IPR011009 -
Gabi4183g00071 484 Pfam Protein kinase domain 29 283 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4183g00071 484 Pfam NAF domain 311 367 IPR004041 GO:0007165
Gabi4183g00071 484 CDD CIPK_C 315 425 - -
Gabi4183g00071 484 FunFam Non-specific serine/threonine protein kinase 311 429 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4183g00071 Gabi-Chr4183 586162 588012 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4183g00071 24 432 CBL-interacting serine-threonine protein kinases AT4G18700 79.954 0.0 722
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Gabi4183g00071 Pkinase 5.4e-74 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4183g00071 - - gmx:100790133 814.298