Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4183g00070 ATGGCGGACGTTGTTTCCAAGAAGGTAAACACGAACCCCATTAGCAGCAACAAGAAGGAGACACCAAATCTGATACTGGGTCGCTATGAGATTGGGAAGCTCCTTGGCCATGGAACCTTCGCGAAGGTTTACCATGCGAGGAACATCAAAACCGGTGAAGGGGTGGCCATAAAGGTGATCGACAAGGAGAAGATCCTAAAGGGTGGGTTGGTGGCACATATCAAGCGCGAGATCTCGATCCTCCGGCGTGTTCGCCACCCCAACATCGTGCAACTCTTCGAAGTTATGGCCACCAAGACCAAGATCTACTTTGTAATGGAATACGTTCGTGGGGGTGAGCTTTTCAACAAGGTTGCAAAAGGGAGGTTGAAGGAGGAGGTTGCAAGGAAGTACTTTCAGCAGTTGATCTCTGCTGTTGAGTTTTGTCACGCTAGAGGGGTGTTCCATAGGGATCTCAAGCCTGAAAATTTGTTGCTTGATGAGAATGGTAACCTCAAAGTTTCTGATTTTGGGTTGAGTGCGGTGTCTGATCAAATCAGGCAAGATGGGTTGTTCCACACGTTTTGTGGGACTCCTGCTTATGTTGCTCCTGAGGTTTTGGCAAGGAAAGGTTATGATGGTGCAAAGGTTGATCTTTGGTCTTGTGGGGTTGTCTTGTTTGTGTTGATGGCAGGGTATTTGCCATTCCATGACCAGAATGTCATGGCAATGTATAAGAAGATTTACAGAGGTGAATTCAGGTGCCCTAGGTGGTTCTCACCTGACCTCTCTAGGCTCCTCACTAGGCTTCTTGATACCAAGCCCGAGACACGGATGGCTATCCCTGAGATTATGGAGAATAGGTGGTTCAAGAAAGGGTTCAAACAAATTAAGTTTTATGTTGAGGATGATAGGGTTTCAAGTTTGAATGCTTTTGACATTATATCATTCTCTCCGGGTTTTGATCTTTCTGGATTGTTTGAGGAAAAAGGGGATGAGGCCAGGTTTGTGACTGCAGCCCCAGTTTCCAAGATCATATCAAAATTGGAGGAAATTGGTCACCTGGTTAGATTTAGTGTAAGGAAAAAAGATTGCAGGGTCAGCTTGGAGGGTACTAGAGAAGGTGTAAAAGGGCCGTTGACAATTGCTGCAGAGATATTTGAATTGACACCTTCTTTGGTTGTGGTTGAGGTGAAGAAAAAAGGAGGGGATAGAGCAGAGTATGAGAGATTTTGTAACGATGAATTGAAACCTGGGCTGCTGAATTTGATGAAGGATGAATCTGCAACTTCTTCTGGCTTGCAGACACCTACTGAGCCTTCCCTAATACGTGTGCTTTCTGAACCTGGGCACAGCATAGCTTCGGATATTGAATCTTCACTCTATGAACCTGCAGATATTGAACCTCCACTCTTTACAGTTACACCTTCTGAGATTTGA 1419 0.4538 MADVVSKKVNTNPISSNKKETPNLILGRYEIGKLLGHGTFAKVYHARNIKTGEGVAIKVIDKEKILKGGLVAHIKREISILRRVRHPNIVQLFEVMATKTKIYFVMEYVRGGELFNKVAKGRLKEEVARKYFQQLISAVEFCHARGVFHRDLKPENLLLDENGNLKVSDFGLSAVSDQIRQDGLFHTFCGTPAYVAPEVLARKGYDGAKVDLWSCGVVLFVLMAGYLPFHDQNVMAMYKKIYRGEFRCPRWFSPDLSRLLTRLLDTKPETRMAIPEIMENRWFKKGFKQIKFYVEDDRVSSLNAFDIISFSPGFDLSGLFEEKGDEARFVTAAPVSKIISKLEEIGHLVRFSVRKKDCRVSLEGTREGVKGPLTIAAEIFELTPSLVVVEVKKKGGDRAEYERFCNDELKPGLLNLMKDESATSSGLQTPTEPSLIRVLSEPGHSIASDIESSLYEPADIEPPLFTVTPSEI 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4183g00070 472 SUPERFAMILY Protein kinase-like (PK-like) 25 284 IPR011009 -
Gabi4183g00070 472 CDD CIPK_C 303 413 - -
Gabi4183g00070 472 Pfam NAF domain 300 355 IPR004041 GO:0007165
Gabi4183g00070 472 ProSiteProfiles NAF domain profile. 297 321 IPR018451 GO:0007165
Gabi4183g00070 472 Gene3D Kinase associated domain 1, KA1 298 418 - -
Gabi4183g00070 472 ProSitePatterns Protein kinases ATP-binding region signature. 35 58 IPR017441 GO:0005524
Gabi4183g00070 472 Gene3D Transferase(Phosphotransferase) domain 1 111 290 - -
Gabi4183g00070 472 FunFam Non-specific serine/threonine protein kinase 20 108 - -
Gabi4183g00070 472 ProSitePatterns Serine/Threonine protein kinases active-site signature. 147 159 IPR008271 GO:0004672|GO:0006468
Gabi4183g00070 472 CDD STKc_SnRK3 28 282 - -
Gabi4183g00070 472 ProSiteProfiles Protein kinase domain profile. 29 283 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4183g00070 472 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 23 411 - -
Gabi4183g00070 472 SMART serkin_6 29 283 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4183g00070 472 FunFam Non-specific serine/threonine protein kinase 299 417 - -
Gabi4183g00070 472 FunFam Non-specific serine/threonine protein kinase 19 308 - -
Gabi4183g00070 472 Gene3D Phosphorylase Kinase; domain 1 3 110 - -
Gabi4183g00070 472 Pfam Protein kinase domain 29 283 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4183g00070 Gabi-Chr4183 586162 588012 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4183g00070 24 420 CBL-interacting serine-threonine protein kinases AT4G18700 78.132 0.0 703
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Gabi4183g00070 Pkinase 5e-74 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4183g00070 - - gmx:100790133 793.112