Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4183g00062 ATGGCGGACGTTGTTTCCAAGAAGGTAAACACGAACCCCATTAGCAGCAACAAGAAGGAGACACCAAATCTGATACTGGGTCGCTATGAGATTGGGAAGCTCCTTGGCCATGGAACCTTCGCGAAGGTTTACCATGCGAGGAACATCAAAACCGGTGAAGGGGTGGCCATAAAGGTGATCGACAAGGAGAAGATCCTAAAGGGTGGGTTGGTGGCACATATCAAGCGCGAGATCTCGATCCTCCGGCGTGTTCGCCACCCCAACATCGTGCAACTCTTCGAAGTTATGGCCACCAAGACCAAGATCTACTTTGTAATGGAATACGTTCGTGGGGGTGAGCTTTTCAACAAGGTTGCAAAAGGGAGGTTGAAGGAGGAGGTTGCAAGGAAGTACTTTCAGCAGTTGATCTCTGCTGTTGAGTTTTGTCACGCTAGAGGGGTGTTCCATAGGGATCTCAAGCCTGAAAATTTGTTGCTTGATGAGAATGGTAACCTCAAAGTTTCTGATTTTGGGTTGAGTGCGGTGTCTGATCAAATCAGGCAAGATGGGTTGTTCCACACGTTTTGTGGGACTCCTGCTTATGTTGCTCCTGAGGTTTTGGCAAGGAAAGGTTATGATGGTGCAAAGGTTGATCTTTGGTCTTGTGGGGTTGTCTTGTTTGTGTTGATGGCAGGGTATTTGCCATTCCATGACCAGAATGTCATGGCAATGTATAAGAAGATTTACAGAGGTGAATTCAGGTGCCCTAGGTGGTTCTCACCTGACCTCTCTAGGCTCCTCACTAGGCTTCTTGATACCAAGCCCGAGACACGGATGGCTATCCCTGAGATTATGGAGAATAGGTGGTTCAAGAAAGGGTTCAAACAAATTAAGTTTTATGTTGAGGATGATAGGGTTTGTAATGTTGATGATAACCTGTTGGACAATGAAGATGATGCAGCATCCATTGCATCCCTTTCAGATTACTCAGTATCAGAATCTGACTCTGAGGTAGAGATTAGAAGGAGGAATGCTCCATTGCCAAGACCAGCAAGTTTGAATGCTTTTGACATTATATCATTCTCTCCGGGTTTTGATCTTTCTGGATTGTTTGAGGAAAAAGGGGATGAGGCCAGGTTTGTGACTGCAGCCCCAGTTTCCAAGATCATATCAAAATTGGAGGAAATTGGTCACCTGGTTAGATTTAGTGTAAGGAAAAAAGATTGCAGGGTCAGCTTGGAGGGTACTAGAGAAGGTGTAAAAGGGCCGTTGACAATTGCTGCAGAGATATTTGAATTGACACCTTCTTTGGTTGTGGTTGAGGTGAAGAAAAAAGGAGGGGATAGAGCAGAGTATGAGAGATTTTGTAACGATGAATTGAAACCTGGGCTGCTGAATTTGATGAAGGATGAATCTGCAACTTCTTCTGGCTTGCAGACACCTACTGAGCCTTCCCTAATACGTGTGCTTTCTGAACCTGGGCACAGCATAGCTTCGGATATTGAATCTTCACTCTATGAACCTGCAGATATTGAACCTCCACTCTTTACAGTTACACCTTCTGAGATTTGA 1551 0.4513 MADVVSKKVNTNPISSNKKETPNLILGRYEIGKLLGHGTFAKVYHARNIKTGEGVAIKVIDKEKILKGGLVAHIKREISILRRVRHPNIVQLFEVMATKTKIYFVMEYVRGGELFNKVAKGRLKEEVARKYFQQLISAVEFCHARGVFHRDLKPENLLLDENGNLKVSDFGLSAVSDQIRQDGLFHTFCGTPAYVAPEVLARKGYDGAKVDLWSCGVVLFVLMAGYLPFHDQNVMAMYKKIYRGEFRCPRWFSPDLSRLLTRLLDTKPETRMAIPEIMENRWFKKGFKQIKFYVEDDRVCNVDDNLLDNEDDAASIASLSDYSVSESDSEVEIRRRNAPLPRPASLNAFDIISFSPGFDLSGLFEEKGDEARFVTAAPVSKIISKLEEIGHLVRFSVRKKDCRVSLEGTREGVKGPLTIAAEIFELTPSLVVVEVKKKGGDRAEYERFCNDELKPGLLNLMKDESATSSGLQTPTEPSLIRVLSEPGHSIASDIESSLYEPADIEPPLFTVTPSEI 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4183g00062 516 ProSiteProfiles NAF domain profile. 341 365 IPR018451 GO:0007165
Gabi4183g00062 516 FunFam Non-specific serine/threonine protein kinase 20 108 - -
Gabi4183g00062 516 ProSitePatterns Protein kinases ATP-binding region signature. 35 58 IPR017441 GO:0005524
Gabi4183g00062 516 Pfam Protein kinase domain 29 283 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4183g00062 516 FunFam Non-specific serine/threonine protein kinase 343 461 - -
Gabi4183g00062 516 ProSitePatterns Serine/Threonine protein kinases active-site signature. 147 159 IPR008271 GO:0004672|GO:0006468
Gabi4183g00062 516 CDD STKc_SnRK3 28 282 - -
Gabi4183g00062 516 FunFam Non-specific serine/threonine protein kinase 19 336 - -
Gabi4183g00062 516 ProSiteProfiles Protein kinase domain profile. 29 283 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4183g00062 516 Gene3D Transferase(Phosphotransferase) domain 1 19 337 - -
Gabi4183g00062 516 SMART serkin_6 29 283 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4183g00062 516 SUPERFAMILY Protein kinase-like (PK-like) 25 284 IPR011009 -
Gabi4183g00062 516 Gene3D Kinase associated domain 1, KA1 343 462 - -
Gabi4183g00062 516 CDD CIPK_C 347 457 - -
Gabi4183g00062 516 Pfam NAF domain 343 399 IPR004041 GO:0007165
Gabi4183g00062 516 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 23 455 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4183g00062 Gabi-Chr4183 586162 588012 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4183g00062 24 464 CBL-interacting serine-threonine protein kinases AT4G18700 82.353 0.0 753
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Gabi4183g00062 Pkinase 6.3e-74 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4183g00062 - - gmx:100790133 838.18