Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4183g00061 ATGAAGCCCTTTTTCAGATTCTTGATTCTCCTGGCGGTGGTTGTTCTTGTGGAATCTTCATGCAACGGTGGAGACAGGGACCTGGTGTCAAAGGCCTTTCAATCTGTCTCTGGATTCAACGATTCCTGGTTCCAAACAGAAGGTTCCAACTGTTCAGAGGCTCAGATTAAATGGATAGATCTTCCGTCAAAAAACATGAGCGGGAGCATCTCATGGAGGCACCTGAAGAACATGTCCAAGTTAGAGGTTCTCGATCTGTCTGGGAATTCTCTGCAAGGCCAGGTCCCAAACTGGTTTTGGACAAGCTCAAGCTTATTGGTAGTGAATCTGTCCAAGAACAGATTTGGAGGGAGCATTGCGTTGAAACCCACTTCACAAAATGGTTCCTTTTCATCACTGCAAACGCTCAATCTATCCCACAACAGGTTCACCAATCAGGTTCAGCTCTCTGGTTTCTCAAACATGAAAAGCCTCGACCTTTCACACAACAGTCTAGGCACTTTGCCTTCTGGGTTCGAAAAACTCACCAACCTACACCACCTTGATCTCTCTAGCTGCAACATCAAAGGAAACGTAAAACCCATTTCTACCCTTGTGTCACTTTCCTACTTGGACTTGTCAAACAACACTTTGAATGGTAGTTTCCCTTCTGATTTCCCTTCTCTTAACGCCATCAAATTCTTGAACATCTCCCACAACAACTTCAAAGCATCGGTTGCCTTAGACAGGTTCAAGAAATTTGGCAAATCAGCATTCGTTCATGCCGGTAACAACTTCAACTACGATGCATTCAAAACCCCAAACCTTCATTCAACCCCGACACATAAACCCCACATGGGAAAACAACAAACCGTTCACACCGAGAAGAAGAGACCGAAACGTAAGTCAAAACCCAAAAACAAAACAATTATTGCGGCAGTGTGCTCTGCGTCAGCCCTAGTACTTGTCGTGTTGTGCACATGTGCATTCTGCGGTTACAGAAAGAAGAGAAGATTGGCGAAAAGGAACAAATGGGCAATCTCGAAACCGGTTCCATTGACCATCAAGCTGGAGAAATCAGGACCGTTCGCGTTTGAGACCGAGTCAGGGACATCATGGGTGGCTGACCTAAAGGAACCATCTTCTGCACCCGTGGTCATGTTCGAGAAGCCATTGATGAACCTCACCTTCATGGACCTCATCGCCGCCACGTCACACTTTGGCAAGGACTCCCAACTCGCAGAGGGAAGGTGTGGTCCCGTTTATCGTGCGGTCTTACCAGGAGATATCCACGTGGCAATCAAGGTCCTCGAAAACGCCAGAGACGTTGATCATGATGACGCGGTTGCCACCTTCGTTGACCTCTCCAAGCTCAAGCATCCCAATCTGTTGCCCCTCTCCGGTTACTGCATTGCAGGTAAGGAGAAGTTGGTATTCTACGAATTTATGCCAAACGGGGATTTGGGTAGGTGGCTACATGAGCTACCAACGGGGGAGACTAACGTGGAGGATTGGAGTGGTGACACGTGGGAGATTCAAAATGGCGTCGTTTCGCGAGCCTCATCCCCGGAAAAGATGGGTTGGCCAACACGACACCGTATTGCCGTTGGTGTAGCGCGTGGGCTAGCTTTCCTCCACCACGCGGGGTCGAGGCCCGTCGTGCACGGCCATCTGGTGACGTCAAACGTTCTCCTCGCCGAAGACTTCGAGCCCCGGATCGCCGATTTCGGGTTCCGGAAGATCGGGCAGATAGCCGCCCCGAATTGCACCACCGAGACGGACGTGTACTGCTTCGGGGTGGTTCTGATGGAGCTGCTCACGGGAAGATCCGGCACGGCGGAGACGGTGGTTTGGGTGAGGAAGCTGGTGAGGGAGGGTCACGGTGTGCGGACGCTGGACGAGAGGCTCAAACTCGGTGGCGGCGACTCGGTGAGTCAGATGGTGGAGAGCCTCCGAGTCGCGTACTTGTGTACGGCCGAGTCACCGGCGAAGAGGCCCACAATGCAGCAGGTGTTGGGTCTTCTCAAAGACATTCATCCCAGTCGCGGACTCGACTGA 2037 0.5115 MKPFFRFLILLAVVVLVESSCNGGDRDLVSKAFQSVSGFNDSWFQTEGSNCSEAQIKWIDLPSKNMSGSISWRHLKNMSKLEVLDLSGNSLQGQVPNWFWTSSSLLVVNLSKNRFGGSIALKPTSQNGSFSSLQTLNLSHNRFTNQVQLSGFSNMKSLDLSHNSLGTLPSGFEKLTNLHHLDLSSCNIKGNVKPISTLVSLSYLDLSNNTLNGSFPSDFPSLNAIKFLNISHNNFKASVALDRFKKFGKSAFVHAGNNFNYDAFKTPNLHSTPTHKPHMGKQQTVHTEKKRPKRKSKPKNKTIIAAVCSASALVLVVLCTCAFCGYRKKRRLAKRNKWAISKPVPLTIKLEKSGPFAFETESGTSWVADLKEPSSAPVVMFEKPLMNLTFMDLIAATSHFGKDSQLAEGRCGPVYRAVLPGDIHVAIKVLENARDVDHDDAVATFVDLSKLKHPNLLPLSGYCIAGKEKLVFYEFMPNGDLGRWLHELPTGETNVEDWSGDTWEIQNGVVSRASSPEKMGWPTRHRIAVGVARGLAFLHHAGSRPVVHGHLVTSNVLLAEDFEPRIADFGFRKIGQIAAPNCTTETDVYCFGVVLMELLTGRSGTAETVVWVRKLVREGHGVRTLDERLKLGGGDSVSQMVESLRVAYLCTAESPAKRPTMQQVLGLLKDIHPSRGLD 678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4183g00061 678 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 46 671 - -
Gabi4183g00061 678 Pfam Protein tyrosine and serine/threonine kinase 403 572 IPR001245 GO:0004672|GO:0006468
Gabi4183g00061 678 FunFam Putative LRR receptor-like serine/threonine-protein kinase 361 475 - -
Gabi4183g00061 678 SUPERFAMILY L domain-like 54 238 - -
Gabi4183g00061 678 FunFam Calmodulin-binding receptor kinase CaMRLK 131 241 - -
Gabi4183g00061 678 Gene3D Transferase(Phosphotransferase) domain 1 476 676 - -
Gabi4183g00061 678 SUPERFAMILY Protein kinase-like (PK-like) 377 668 IPR011009 -
Gabi4183g00061 678 Gene3D Ribonuclease Inhibitor 127 311 IPR032675 -
Gabi4183g00061 678 MobiDBLite consensus disorder prediction 270 298 - -
Gabi4183g00061 678 SMART LRR_typ_2 198 222 IPR003591 -
Gabi4183g00061 678 SMART LRR_typ_2 78 101 IPR003591 -
Gabi4183g00061 678 SMART LRR_typ_2 152 174 IPR003591 -
Gabi4183g00061 678 Gene3D Phosphorylase Kinase; domain 1 360 475 - -
Gabi4183g00061 678 ProSiteProfiles Leucine-rich repeat profile. 132 153 IPR001611 GO:0005515
Gabi4183g00061 678 ProSiteProfiles Protein kinase domain profile. 400 675 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4183g00061 678 Gene3D Ribonuclease Inhibitor 27 126 IPR032675 -
Gabi4183g00061 678 PRINTS Leucine-rich repeat signature 198 211 - -
Gabi4183g00061 678 PRINTS Leucine-rich repeat signature 81 94 - -
Gabi4183g00061 678 Pfam Leucine rich repeat 132 188 IPR001611 GO:0005515
Gabi4183g00061 678 Pfam Leucine rich repeat 57 115 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4183g00061 Gabi-Chr4183 563342 567077 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4183g00061 54 671 Receptor kinase-like Gene Family AT5G07280 29.310 2.50e-68 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-2 Gabi4183g00061 PK_Tyr_Ser-Thr 9.5e-21 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4183g00061 - - gmx:100778920 1043.88