Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4183g00055 ATGGCTGAGGATAAGGAGATGTCTACCTCTGTAGTCAATGGGAATGATTCCCTCACAGGTCACATCATATCTACAACGATTGGTGGCAAAAATGGGGAGCCCAAACAGACTATTAGTTACATGGCAGAACGGGTTGTAGGAAATGGATCATTTGGAATTGTTTTCCAGGCAAAATGCTTGGAAACTGGGGAGGCAGTGGCCATTAAGAAGGTTTTACAAGACCGACGATATAAGAATCGTGAACTACAGTTAATGCGTGTGATGGATCATCCAAATGTGATCTCTCTGAAGCATTGTTTCTTTTCCACTACAAGTACAGATGAACTTTTTCTTAATTTGGTGATGGACTATGTTCCAGAGTCCATGTATAGGGTCTTAAAGCACTATAATACTGCTAATCAAAGAATGCCAATCATCTATGTAAAACTTTATATGTACCAGATTTTCAGGGGATTGGCTTATATCCACACCGTTCCTGGAGTTTGCCACAGAGATTTGAAGCCTCAAAATATACTGGTTGATCCTCTTACACACCAAGTTAAGCTCTGTGATTTTGGAAGTGCAAAAGTGCTAGTCAAAGGTGAAGCTAATATATCATACATATGTTCACGTTTCTATCGAGCTCCAGAACTTATATTTGGTGCCACAGAGTATACTACTTCAATTGATATTTGGTCAGCTGGCTGTGTCCTTGCTGAATTGCTTTTGGGCCAGCCATTATTCCCCGGCGAAAATGCAGTGGACCAGCTTGTACATATTATAAAGGTGCTTGGCACACCCACTCGAGAGGAAGTACGCTGTATGAATCCCAATTATAATGACTTTAGGTTTCCACAGATAAAAGCACACCCATGGCACAAGATATTCCATAAAAAGATGCCTCCAGAAGCTATTGATCTTGCTTCCCGGCTTTTGCAATACTCCCCAAGTCTTCGGTGCACTGCGCTTGAGGCATGTGCACATCCTTTCTTTGATGAACTTCGAGAACCCAATGCTCGCTTGCCAAATGGTCGTCCATTTCCCCCTCTGTTCAACTTCAAACAGGAATTGATACCTGATCATGCGAAGCGGCAAATAGGGCTACAATTTGCTCATCTGGCAGGATCCTGA 1110 0.4243 MAEDKEMSTSVVNGNDSLTGHIISTTIGGKNGEPKQTISYMAERVVGNGSFGIVFQAKCLETGEAVAIKKVLQDRRYKNRELQLMRVMDHPNVISLKHCFFSTTSTDELFLNLVMDYVPESMYRVLKHYNTANQRMPIIYVKLYMYQIFRGLAYIHTVPGVCHRDLKPQNILVDPLTHQVKLCDFGSAKVLVKGEANISYICSRFYRAPELIFGATEYTTSIDIWSAGCVLAELLLGQPLFPGENAVDQLVHIIKVLGTPTREEVRCMNPNYNDFRFPQIKAHPWHKIFHKKMPPEAIDLASRLLQYSPSLRCTALEACAHPFFDELREPNARLPNGRPFPPLFNFKQELIPDHAKRQIGLQFAHLAGS 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4183g00055 369 SMART serkin_6 40 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4183g00055 369 CDD STKc_GSK3 35 327 IPR039192 -
Gabi4183g00055 369 Pfam Protein kinase domain 40 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4183g00055 369 Gene3D Transferase(Phosphotransferase) domain 1 120 361 - -
Gabi4183g00055 369 FunFam Shaggy-related protein kinase kappa 120 361 - -
Gabi4183g00055 369 ProSitePatterns Protein kinases ATP-binding region signature. 46 70 IPR017441 GO:0005524
Gabi4183g00055 369 SUPERFAMILY Protein kinase-like (PK-like) 39 351 IPR011009 -
Gabi4183g00055 369 ProSiteProfiles Protein kinase domain profile. 40 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4183g00055 369 FunFam Glycogen synthase kinase-3 beta 24 119 - -
Gabi4183g00055 369 Gene3D Phosphorylase Kinase; domain 1 25 119 - -
Gabi4183g00055 369 ProSitePatterns Serine/Threonine protein kinases active-site signature. 161 173 IPR008271 GO:0004672|GO:0006468
Gabi4183g00055 369 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 5 350 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4183g00055 Gabi-Chr4183 518492 522955 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4183g00055 44 340 MAP Kinase Gene Family AT3G59790 34.740 1.50e-57 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Gabi4183g00055 Pkinase 2.4e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4183g00055 K14502 - gmx:100779909 731.095