Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4183g00054 ATGGAAGATGTCAAAGTGGTTGCTTGGCTCGTTTCCTTCTTTATGTGGAATTGGGTGCCGATGGTTGTTGAGGGCACTGACACCCTTCTCTCTCCAAAGGGTGTCAACTATGAAGTGGCTGCTTTGATATCCATGAAGAGTAAGATGAATGATGACTTGCATGTCATGGATGGTTGGGATATTAATTCGGTTGACCCTTGTACTTGGAACATGGTCGGTTGCTCTGCCGAGGGTAATGTGATTTCCCTGGAAATGGCCAGTTCGGGTTTATCTGGAACGATTTCCTCAGGAATTGGAAATTTGAGCCACCTTCAAACATTGTTATTGCAGAACAATCAGTTATCTGGTCCCATCCCGGCTGAGATTGGGAAGCTGTTGGAACTTCAGACCCTTGACCTTTCTGGTAACCAGCTTATTGGGGAAATTCCTAGTTCTTTGGGCTTTTTGACTCAACTTAGTTACTTGCGGCTCAACAAAAATAAACTATCTGGACATATCCCTCAACTTGTTGCTAATCTCACAGGCCTTTCATTCTTGGACTTGTCATTCAATAATCTCAGTGGTCCCACTCCAAAAATTTTAGCAAAAGGTTATAGTATTTCAGGAAACAACTTCCTCTGCACATCTTCCACACAAATTTGTATGGACGTTTCAAAACCTGTAAATGATACCGGATCATCTCAGAAAGTCAATATTCATCACCAAAGGGTGCTTTCTGTTGTTATTGGCTTTAGTTGCACATTTGTAATTTCAGTGATACTGCTTGTCTATTGGTTGCATTGGTACAGATCACGCATCCTCTATACATCTTATGTGGAGCAAGATTGTGAATTTGATATTGGTCATTTGAAGAGGTTCTCCTTCCGCGAATTGCAAGTTGCTACTGGAAATTTCAGTCCAAAAAATATCCTTGGACAAGGTGGTTTTGGTGTTGTCTACAAAGGATGCCTTGCAAACAAAATGTTGGTGGCAGTAAAGAGGCTGAAAGATCCCAATTACACTGGAGAAGTGCAGTTTCAAACCGAAGTTGAGATGATTGGCTTGGCTGTGCATCGGAACCTCCTGCGTCTTTATGGATTTTGTATGACACCAGATGAAAGGTTACTTGTTTATCCTTACATGCCAAATGGCAGTGTTGCTGATCGCTTGAGAGAAACTTGCCGTGAAAAGCCATCTTTGGACTGGAACAGACGGATGCGTGTTGCTCACGGGGCTGCGCGCGGGCTTCTTTATTTGCATGAACAGTGCAATCCAAAAATAATACACCGGGATGTTAAGGCTGCAAACATCTTGTTAGATGAAAGTTTTGAAGCTGTGGTGGGGGATTTTGGTCTTGCTAAGCTCTTAGATCAAAGGGATTCACATGTAACCACTGCAGTGCGGGGCACTGTAGGGCACATTGCACCAGAGTATCTCTCAACTGGACAATCTTCTGAAAAAACGGATGTTTTTGGATTTGGCATATTACTTTTGGAGCTCATAACAGGACAGAAGGCACTGGATGCTGGAAATGGTCAGGTGCAAAAGGGAATGATTCTTGATTGGGTTAGGACCTTATTTGGAGAGAAGCGGTTGGAAGTGTTAGTTGATAAGGATCTGAAGGGATGTTTTGATCCAGTAGAGTTAGAAAAAGCAGTGGAGTTGTCTTTACAGTGTAGTCAGTCACTTCCCAGTTTGCGGCCAAAGATGTCAGAAGTCTTAAAGATTCTAGAAGGCCTGGTGGGGCAGTCAGTGCGGCCAGAAGAGTCACAAGGGGGGGCTAACCTATATGATGAAAGGACTTGCAGTTTCTCTCAAAATTACAGTGATGTTCATGAAGAACCTTCCTTTGTTATTGAAGCCATTGAGCTTTCTGGACCTCGGTGA 1866 0.4325 MEDVKVVAWLVSFFMWNWVPMVVEGTDTLLSPKGVNYEVAALISMKSKMNDDLHVMDGWDINSVDPCTWNMVGCSAEGNVISLEMASSGLSGTISSGIGNLSHLQTLLLQNNQLSGPIPAEIGKLLELQTLDLSGNQLIGEIPSSLGFLTQLSYLRLNKNKLSGHIPQLVANLTGLSFLDLSFNNLSGPTPKILAKGYSISGNNFLCTSSTQICMDVSKPVNDTGSSQKVNIHHQRVLSVVIGFSCTFVISVILLVYWLHWYRSRILYTSYVEQDCEFDIGHLKRFSFRELQVATGNFSPKNILGQGGFGVVYKGCLANKMLVAVKRLKDPNYTGEVQFQTEVEMIGLAVHRNLLRLYGFCMTPDERLLVYPYMPNGSVADRLRETCREKPSLDWNRRMRVAHGAARGLLYLHEQCNPKIIHRDVKAANILLDESFEAVVGDFGLAKLLDQRDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGQKALDAGNGQVQKGMILDWVRTLFGEKRLEVLVDKDLKGCFDPVELEKAVELSLQCSQSLPSLRPKMSEVLKILEGLVGQSVRPEESQGGANLYDERTCSFSQNYSDVHEEPSFVIEAIELSGPR 621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4183g00054 621 FunFam Putative LRR receptor-like serine/threonine-protein kinase 35 216 - -
Gabi4183g00054 621 Gene3D Transferase(Phosphotransferase) domain 1 374 579 - -
Gabi4183g00054 621 SMART serkin_6 298 569 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4183g00054 621 Pfam Protein kinase domain 301 568 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4183g00054 621 ProSitePatterns Serine/Threonine protein kinases active-site signature. 420 432 IPR008271 GO:0004672|GO:0006468
Gabi4183g00054 621 SUPERFAMILY L domain-like 37 206 - -
Gabi4183g00054 621 Gene3D Phosphorylase Kinase; domain 1 268 373 - -
Gabi4183g00054 621 Pfam Leucine rich repeat N-terminal domain 36 75 IPR013210 -
Gabi4183g00054 621 ProSiteProfiles Protein kinase domain profile. 298 574 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4183g00054 621 FunFam Somatic embryogenesis receptor-like kinase 1 374 588 - -
Gabi4183g00054 621 SUPERFAMILY Protein kinase-like (PK-like) 281 571 IPR011009 -
Gabi4183g00054 621 ProSiteProfiles Leucine-rich repeat profile. 127 150 IPR001611 GO:0005515
Gabi4183g00054 621 ProSitePatterns Protein kinases ATP-binding region signature. 304 326 IPR017441 GO:0005524
Gabi4183g00054 621 Gene3D Ribonuclease Inhibitor 35 215 IPR032675 -
Gabi4183g00054 621 FunFam Somatic embryogenesis receptor kinase 1 268 373 - -
Gabi4183g00054 621 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 31 569 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4183g00054 Gabi-Chr4183 510973 515364 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4183g00054 43 621 Receptor kinase-like Gene Family AT5G45780 71.601 0.0 829
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Gabi4183g00054 Pkinase 6.2e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4183g00054 - - gmx:100810610 1130.16