Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4183g00053 ATGGATCAAACCAGAAGCGAAGGCAAAAGTGAGGTATTGGATCCTGTTCGTGAAGGGGTAAATAAGAATTTGAGTCTTTCGGTTGAAGGGGTTGCAATTGATGCAGTAGATGGAGGCAGCTTGGGTGACAGAGTTAGTATAAGTGGAGAAGTTGGGACTTCAGGAGAGATGTGTAAGGATTCGGGATCCAATAAGGAGCTAAAGGATGTGCCTGAGGAAGTTAAGGTTCAGGACAAGGTTGATCAAGTAAATATCATTGATAAATTGCCTGGGATTGATCAAGGAACTAGTTATAATTCAAACAATTTCGTTAATCAGGAAGTGCTTGAGACTGTGGTTGTAATAGAGTCTGTTCAGACTGAGTATGTCAATAGAGATAATAGGAAATCGGAAGCAAAAGCTAATGAATCAGAGTTGAACTTGTTATCCATGAAAGCTCAAAAGGGGATGTCTGAAACAGATAAAAATTCATTTGTAATTGATATGAAGAGCAGCAGCCGCAAAGGGTTTTGTGAGAATTCTGAAGGTGAAAGGATTTGTAGGATTTGCCATCTGGCTCCTGATGCGACCACTGTTGGCTCTGCTAATAGTGCTACGAGTGCAGATTTGATTCAGCTTGGTTGTGCGTGTAAAGATGAGCTAGGCATTGCACATATTCATTGTGCTGAGGCGTGGTTCAAGCTTAAAGGAAACAGATTATGTGAAATATGTGGTGAGACTGCAAAAAACGTTTCTGGTGTTGCTAATAATGGATTTATGGAAGAGTGGAATGAAAGAAGGTTCAGGAACAACGATGGTAACCCATGTGGATGCTGGCGAGGACAGCCATTTTGTAACTTCTTGATGGCATGCCTGGTAATAGCTTTTGTTCTGCCATGGTTTTTTCGTGTAAATATGTTCTAG 903 0.4097 MDQTRSEGKSEVLDPVREGVNKNLSLSVEGVAIDAVDGGSLGDRVSISGEVGTSGEMCKDSGSNKELKDVPEEVKVQDKVDQVNIIDKLPGIDQGTSYNSNNFVNQEVLETVVVIESVQTEYVNRDNRKSEAKANESELNLLSMKAQKGMSETDKNSFVIDMKSSSRKGFCENSEGERICRICHLAPDATTVGSANSATSADLIQLGCACKDELGIAHIHCAEAWFKLKGNRLCEICGETAKNVSGVANNGFMEEWNERRFRNNDGNPCGCWRGQPFCNFLMACLVIAFVLPWFFRVNMF 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4183g00053 300 ProSiteProfiles Zinc finger RING-CH-type profile. 172 244 IPR011016 GO:0008270
Gabi4183g00053 300 PANTHER ZINC FINGER, RING-CH-TYPE 73 300 - -
Gabi4183g00053 300 Pfam RING-variant domain 180 237 IPR011016 GO:0008270
Gabi4183g00053 300 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 164 249 IPR013083 -
Gabi4183g00053 300 SMART ringv_2 179 238 IPR011016 GO:0008270
Gabi4183g00053 300 SUPERFAMILY RING/U-box 174 240 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4183g00053 Gabi-Chr4183 499381 502025 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4183g00053 128 299 C3H Transcription Factor Family AT5G05830 37.158 1.95e-29 109
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4183g00053 - - gmx:102668208 434.491