Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Gabi4183g00038 | ATGGGAGCAGTAAATGAAGGAATAATCCGAAACAGAAAGAAGTCATCATCCAGAGGACACCATAGGTTTGTAGGGGTTCGTCAAAGGCCATCAGGGAGATGGGTGGCTGAGATCAAAGACTCTCTACAAAAGGTTAGGCTTTGGCTCGGTACATTTGACACTGCTGAAGATGCAGCTCGTGCATATGACACTGCTGCTCGAGCTTTGCGTGGTGCTAATGCTAGGACCAACTTTGAATTGCCAGAGTCTGCAATCTCTGGTGCTACAACTAAGCGCGGTGGTGGTGGTGGTTACAATTTCATTCCTGATAACACTGAACCCTTTTCTTTTGAGGATGTGAATGAGCCTGGGACAGATTCTGATGGCCTTCTTGGTGCACTCAAGGCTAAACTGAAGGAAGGAAGGTTTCCAATTCCATCTCGTGCTAATTGTGTGGTTCAATCTGGTATGTTTTCTAGATCAACTCAAAATTGTTATGGGAAGAAAGAGTTATCATCAGGAGCTACTGTTTTCTCTCCCATGAATGTTACAGCCAACAACAACAGTATTGTCCCTGGTTTAATGGTTACTACTTCATCAAACACTTCTGCTAAGAGTGTTCTTATCCCGAATCATGATCATGAAGGTGCTTTAACAAGCAGTGTTGGATTCAACTCTAATCAACTTTGCCAAACCCCTCCTATGACATGGTCTAATGAAATGGCATATGAATTGCCTTGGCCTTTGCAAATGAACCAAGTTGCTGATAATAGCTTGCTTGCATCTTCAAGTGCAGCCACTTTTACATGGCCACCTTATGGGATAACCGAGTCATCTACTGATATGATATATGCAGATCATGAGGGGCCATCAAATAGCAACAGGAATGGCCAAATGAATATGGGGAACATGCAATTACCTCTAGTTGGTGGAGAAACTGAAGGCTTTTGGACATTGGAACAGCAACAATTTTTGCAATGTGAGAACAACGGTTGGTTTAGTTCTAGTGTTTCTTGGGATCCTCTCCTCTATGTTCCCTCTGAGCTAGCTTGA | 1032 | 0.4331 | MGAVNEGIIRNRKKSSSRGHHRFVGVRQRPSGRWVAEIKDSLQKVRLWLGTFDTAEDAARAYDTAARALRGANARTNFELPESAISGATTKRGGGGGYNFIPDNTEPFSFEDVNEPGTDSDGLLGALKAKLKEGRFPIPSRANCVVQSGMFSRSTQNCYGKKELSSGATVFSPMNVTANNNSIVPGLMVTTSSNTSAKSVLIPNHDHEGALTSSVGFNSNQLCQTPPMTWSNEMAYELPWPLQMNQVADNSLLASSSAATFTWPPYGITESSTDMIYADHEGPSNSNRNGQMNMGNMQLPLVGGETEGFWTLEQQQFLQCENNGWFSSSVSWDPLLYVPSELA | 343 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Gabi4183g00038 | 343 | ProSiteProfiles | AP2/ERF domain profile. | 22 | 79 | IPR001471 | GO:0003700|GO:0006355 | |
Gabi4183g00038 | 343 | Gene3D | AP2/ERF domain | 21 | 80 | IPR036955 | GO:0003700|GO:0006355 | |
Gabi4183g00038 | 343 | SMART | rav1_2 | 22 | 85 | IPR001471 | GO:0003700|GO:0006355 | |
Gabi4183g00038 | 343 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
Gabi4183g00038 | 343 | FunFam | ethylene-responsive transcription factor RAP2-11 | 21 | 80 | - | - | |
Gabi4183g00038 | 343 | PANTHER | SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR | 18 | 180 | - | - | |
Gabi4183g00038 | 343 | Pfam | AP2 domain | 22 | 71 | IPR001471 | GO:0003700|GO:0006355 | |
Gabi4183g00038 | 343 | SUPERFAMILY | DNA-binding domain | 23 | 79 | IPR016177 | GO:0003677 | |
Gabi4183g00038 | 343 | CDD | AP2 | 22 | 79 | IPR001471 | GO:0003700|GO:0006355 | |
Gabi4183g00038 | 343 | PRINTS | Ethylene responsive element binding protein signature | 23 | 34 | IPR001471 | GO:0003700|GO:0006355 | |
Gabi4183g00038 | 343 | PRINTS | Ethylene responsive element binding protein signature | 45 | 61 | IPR001471 | GO:0003700|GO:0006355 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Gabi4183g00038 | Gabi-Chr4183 | 417637 | 418670 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Gabi4183g00038 | 10 | 78 | AP2-EREBP Transcription Factor Family | AT5G19790 | 67.143 | 1.31e-26 | 104 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | AP2 or ERF-ERF | Gabi4183g00038 | AP2 | 5.9e-13 | CL0081 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Gabi4183g00038 | - | - | gmx:102661478 | 396.741 |