Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4183g00038 ATGGGAGCAGTAAATGAAGGAATAATCCGAAACAGAAAGAAGTCATCATCCAGAGGACACCATAGGTTTGTAGGGGTTCGTCAAAGGCCATCAGGGAGATGGGTGGCTGAGATCAAAGACTCTCTACAAAAGGTTAGGCTTTGGCTCGGTACATTTGACACTGCTGAAGATGCAGCTCGTGCATATGACACTGCTGCTCGAGCTTTGCGTGGTGCTAATGCTAGGACCAACTTTGAATTGCCAGAGTCTGCAATCTCTGGTGCTACAACTAAGCGCGGTGGTGGTGGTGGTTACAATTTCATTCCTGATAACACTGAACCCTTTTCTTTTGAGGATGTGAATGAGCCTGGGACAGATTCTGATGGCCTTCTTGGTGCACTCAAGGCTAAACTGAAGGAAGGAAGGTTTCCAATTCCATCTCGTGCTAATTGTGTGGTTCAATCTGGTATGTTTTCTAGATCAACTCAAAATTGTTATGGGAAGAAAGAGTTATCATCAGGAGCTACTGTTTTCTCTCCCATGAATGTTACAGCCAACAACAACAGTATTGTCCCTGGTTTAATGGTTACTACTTCATCAAACACTTCTGCTAAGAGTGTTCTTATCCCGAATCATGATCATGAAGGTGCTTTAACAAGCAGTGTTGGATTCAACTCTAATCAACTTTGCCAAACCCCTCCTATGACATGGTCTAATGAAATGGCATATGAATTGCCTTGGCCTTTGCAAATGAACCAAGTTGCTGATAATAGCTTGCTTGCATCTTCAAGTGCAGCCACTTTTACATGGCCACCTTATGGGATAACCGAGTCATCTACTGATATGATATATGCAGATCATGAGGGGCCATCAAATAGCAACAGGAATGGCCAAATGAATATGGGGAACATGCAATTACCTCTAGTTGGTGGAGAAACTGAAGGCTTTTGGACATTGGAACAGCAACAATTTTTGCAATGTGAGAACAACGGTTGGTTTAGTTCTAGTGTTTCTTGGGATCCTCTCCTCTATGTTCCCTCTGAGCTAGCTTGA 1032 0.4331 MGAVNEGIIRNRKKSSSRGHHRFVGVRQRPSGRWVAEIKDSLQKVRLWLGTFDTAEDAARAYDTAARALRGANARTNFELPESAISGATTKRGGGGGYNFIPDNTEPFSFEDVNEPGTDSDGLLGALKAKLKEGRFPIPSRANCVVQSGMFSRSTQNCYGKKELSSGATVFSPMNVTANNNSIVPGLMVTTSSNTSAKSVLIPNHDHEGALTSSVGFNSNQLCQTPPMTWSNEMAYELPWPLQMNQVADNSLLASSSAATFTWPPYGITESSTDMIYADHEGPSNSNRNGQMNMGNMQLPLVGGETEGFWTLEQQQFLQCENNGWFSSSVSWDPLLYVPSELA 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4183g00038 343 ProSiteProfiles AP2/ERF domain profile. 22 79 IPR001471 GO:0003700|GO:0006355
Gabi4183g00038 343 Gene3D AP2/ERF domain 21 80 IPR036955 GO:0003700|GO:0006355
Gabi4183g00038 343 SMART rav1_2 22 85 IPR001471 GO:0003700|GO:0006355
Gabi4183g00038 343 MobiDBLite consensus disorder prediction 1 20 - -
Gabi4183g00038 343 FunFam ethylene-responsive transcription factor RAP2-11 21 80 - -
Gabi4183g00038 343 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 18 180 - -
Gabi4183g00038 343 Pfam AP2 domain 22 71 IPR001471 GO:0003700|GO:0006355
Gabi4183g00038 343 SUPERFAMILY DNA-binding domain 23 79 IPR016177 GO:0003677
Gabi4183g00038 343 CDD AP2 22 79 IPR001471 GO:0003700|GO:0006355
Gabi4183g00038 343 PRINTS Ethylene responsive element binding protein signature 23 34 IPR001471 GO:0003700|GO:0006355
Gabi4183g00038 343 PRINTS Ethylene responsive element binding protein signature 45 61 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4183g00038 Gabi-Chr4183 417637 418670 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4183g00038 10 78 AP2-EREBP Transcription Factor Family AT5G19790 67.143 1.31e-26 104
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Gabi4183g00038 AP2 5.9e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4183g00038 - - gmx:102661478 396.741