Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4183g00035 ATGTTTGGTCTCCGTGGAATCGTTTCTGATATCGCTCTCCACCTTCGTCAAAACCTATCGCATCGGGGAGTGCGTGTACAGAATATAAACATTGGAGGTGGTGTTGGAGGGGAGATACCAGATAACAAGCGCCTTGAGTATGCTCTTCAGCATATTCATGGAATTGGTCGTTCCAAAGCTCACCACATTGTGTGTGAGCTTGGAGTTGAGAACAAGTATGTCAAGGACCTTAGCAAAAGAGAACTATATTCTATTCGCGAATTACTTTCCAAGTACTTGATTGGAAATGATTTGAAAAAAATGGTTGAGAAAGATGTGGGAAGGTTGGTTACCGTTCAGTGCTACAGAGGGATCAGGCATGCCGATGGTTTACCCTGTCGAGGACAGCGAACTCATACAAATGCCCGCACCAGGAGGAGTAGGCGTACCTATGGGGGATCAAGATAA 447 0.4541 MFGLRGIVSDIALHLRQNLSHRGVRVQNINIGGGVGGEIPDNKRLEYALQHIHGIGRSKAHHIVCELGVENKYVKDLSKRELYSIRELLSKYLIGNDLKKMVEKDVGRLVTVQCYRGIRHADGLPCRGQRTHTNARTRRSRRTYGGSR 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4183g00035 148 ProSitePatterns Ribosomal protein S13 signature. 116 129 IPR018269 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Gabi4183g00035 148 PANTHER 30S RIBOSOMAL PROTEIN S13/40S RIBOSOMAL PROTEIN S18 27 143 - -
Gabi4183g00035 148 FunFam 30S ribosomal protein S13 35 100 - -
Gabi4183g00035 148 Gene3D 30s ribosomal protein s13, domain 2 102 144 IPR027437 -
Gabi4183g00035 148 Gene3D - 35 100 - -
Gabi4183g00035 148 ProSiteProfiles Ribosomal protein S13 family profile. 35 140 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Gabi4183g00035 148 MobiDBLite consensus disorder prediction 132 148 - -
Gabi4183g00035 148 Pfam Ribosomal protein S13/S18 36 137 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Gabi4183g00035 148 MobiDBLite consensus disorder prediction 126 148 - -
Gabi4183g00035 148 Hamap 30S ribosomal protein S13 [rpsM]. 23 147 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Gabi4183g00035 148 SUPERFAMILY S13-like H2TH domain 36 142 IPR010979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4183g00035 Gabi-Chr4183 354744 355864 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4183g00035 24 136 Cytoplasmic Ribosomal Protein Gene Family AT4G09800 27.737 5.46e-06 42.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4183g00035 K02952 - gmx:100527465 208.379