Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4183g00031 ATGACTCGGGCTGTCCGCAATAGGGTACTAAAGGATGCCAATGGTGATATTAGTGATCATCTACGCAACCACATCCATTTAACAAATTGTATTCACTTGAAGAACCACATGCACAAGAACAGCCCCATACTGGCTGATAGGTCAATCATGAGGGATCTTGTTGTGCTGCAAAGATCACGCTCTCTCAGGGACCCTTCTGCGAGTCCTCCATCATGGCACTCACCTTCTGTAGCTGATGTACATTTCAGAAGAGTTGAAAATGATGCCATGGTTCAGGGGGGAAGAAGGTCTGTAGGTGTTGAGCGCAGGAAGGAAGGGAGGAGATTGTCTGGAACCTCACCACCCTTGGTGAATTTAGGTACATCAAGAGCTGCTTCAGGTGAGGCTAGTAGGGGTAATGATGGGGTACTGGCAACTAGTGAACGTGGTAGCACGAGTGTAATGGGCGATGGGAGGAGAGTTGGGAGAGAAGCAACTGGTAGGAAGAGTGATAGGCCTGATTATTTGGATGTTAGTCAAGAGCAACCTCTCAATCAAGCTGGCAAAAGTTTGGCTGAAGATGTTATTTCAAGGCATTCTGAATCTAAAGAGAGAAGGAGCAGACAGCGGGGGAAGAATGTTCAGGATGTTCAAGTTAAGACCCTTTCTGAGCAGCTGAACGATGTTCCATTGGATAGTGATGATTTAGCATCATCAAACATTCATTTTCGAGGAAGGTATCCAAGACAGGGGAAAATTATTGAGGAGGCAGAGGCCGGCATACATGGTCATGGCAGGGGAATGAATAGAGTAAAAAGGCGTAAATTTCGAAACACAAGAAGAGCTCGGGTTGCTACATCATCAAGAGATATTGGAGCTGAGAATGAATTGTCTGTGGCTTCCAACTCATTGGCTCAGGGTACAACTCTCCCCAAATATCACTCGGAGGAGGTTAATGATTATGCAGATGAAAATGTTACTAGAGCTCCAAAAAATGGGTGCGGCATTCCTTGGAATTGGTCCAGAATTCATCATAGAGGTAAAACAATCCTTGACATGGCTGGGAGAAGTTTTTCTTGTGGTTTATCTGACTCTAGGTTAAAGAAAGGGACATTAAATGCCAATGGAAGAAATATTTCTGAGATGCCTTTGGCATCCGAGCAATCAAGCTCGTGTACTAAATCTGATGCTGAGGTACTACCTTTACTACCTGAGGCATCTGGATCTCATGGAAGCACTGAAAATGCTTGTTGGGACCACGATTATTCTGGGGAACTAGGTCTCTTTGGTGATAATTTGTTCAAGCATGATATCGATTCTGACCTTGCTTCTGAAGCTAGATCTGGCAACCAGCACAAGTTGAGAGGGAATCGTCGTAGTAGACACCAAAGCCTAACACAAAAATATATGCCGCGAACATTCAGAAATATGGTTGGACAGAATTTAGTGGCACAAGCTCTTTCAAATGCAGTAATGAGAAGGAAAGTTGGATTGCTATATGTGTTTTATGGTCCCCATGGCACTGGAAAAACTTCCTGTGCTCGCATATTTGCCAGAGCTTTGAATTGCAATTCTTCAGAACACCCAAAACCTTGTGGCTTTTGCAATTATTGCATAGCACATGATATGGGCAAGAGTAGAAATATAAGAGAAATTGGTCCAGTCAGTAATTTTGACTCTGATAGCATCATGGATCTACTTGACAGTATGATTGTTTCCCCGCTTCCGTCACAGTACAAAGTGTTTATTTTTGATGACTGTGATACTCTGTCAGCAGATTGTTGGAATGCTATATCGAAGGTCATAGATCGAGCACCTAGGCGCGTGGTTTTTATGCTTGTCAGTTCTAGTCTTGATGTCTTGCCTCATATAATAATATCCAGGTGCCAAAAATTCTTTTTCCCAAAGCTGAAGGATGCAGATATTATATATACACTGCAGTGGATTGCAACCAAAGAAGGTCTAGAAATTGATAAGGATGCCATGAAACTCATTGCATCAAGATCAGATGGATCATTGAGAGATGCTGAGATGACCCTTGAACAACTTAGTTTGCTTGGGCAGAGAATATCTGTTCCTCTTGTTCAGGAACTGGTAGGGCTTATCTCTGATGAGAAATTGGTGGATCTGCTTGATTTGGCATTATCTGCAGACACAGTTAACACTGTGAAGAATTTGAGAGTGATCATGGAAACTGGTGTTGAGCCATTAGCTTTAATGTCACAACTTGCTACCGTAATTACTGATATACTTGCTGGGACCTATGATTTCACAAAAGAAAGGCGAAGAAGGAAGTTCTTCCGGAGACAGCCATTGTCCAAAGAAGACATGGAAAAGCTTCGCCAAGCTCTGAAAACTTTATCTGAAGCTGAGAAGCAGTTGAGGATGTCCAATGACAAGCTAACGTGGTTGACAGCTGCATTGCTTCAACTTGCTCCTGACCAGCAATATGTGTTGCCTACTTCATCTGATAATAGTTTCAACCATAGTCCCTTGGCTCTAAAAAATGCAGATGGGAGAGAAGCAGCTAGAATAGGTGGTAATCCTGTTGAAATTCCTAATGAAGCGAGACGAGTATCAATGGATGCTAGAATAGAAAATTTCTATGCTGGAAGCTCAGTAGATCGTATGACAAAGGGTCTTAGTTCAGAGAAAAGGAGACTTAGTGTGTCTGGTTTTGCTCCTCAACATACTTATTCGCATGCCACCAATAATATTAGGATGAATGAAAGGCAGATTTTTGGTAAAAACCATAAAGAAATTGAAGAGATATGGTTACAGGTGCTTGAGAGGATTCCAATTACTGGTCTGAGAAAATTCTTGCATAAAGAAGGCAAGCTGATCTCTGTTAGTTTTGGGGCAGCTCCAACTGTGCAGCTAATGCTTAGTTCTCAACAGACCAAATCTACTGCTGAGAGGTTCACAGGTCCCATCTCACAAGCATTTGAATCTATCCTTGGATCTTCTATAACAATAGAAATTAGATGTGATTCAAATAAAGATGAAGGCTCAGCTGTTCAACTGCCTCTTATATTGCCTGCTGTCAACGATGGTTCGTCCCAGATTAGAGACTTAAATGGTGTTGGCACTCAAGCTCATCCTGCACTAACTGATTCTGTTGGAAATAGAAGGTGGGAAGAGGCAGCTTCTCAAGTGGAGCACAAGAATAATGAGCAGCAGGTTGATGCTCATGCAACACCTTATAGAAGCCTAGAAGGTACAAGCATAGGACATGCATCAGCTTCCCAAAAAAAGCCAATTGTTTTAGAGCGAAGAAAGCTTACAGACTTAAATGGTGTTGGCACTCAAGTTCGTCGTGAACTAACTGATTCTGTTGGAAATAGAAGGGGTGAAATTGTAGAAGAGGCAGCTTCTCAAGTGGAGCACAAGAATAATGAGCAGCAGGTTGATGCTCATGCAACACCTTATAGAAGTCTAGAAGGTACAAGCATAGGACATGCATCAGCTTCCCAAAAAAAGCCAATTGTTTTAGACCGCAGAAAGCTCAGGGAGCAGGGTCATAGTCAAAGTCTTGTAAGAAGTAAGGTATCCCTTGCTCATGTAATCCAGCAGGCCGAAGGTCAGCGAAGTGGGTGGTCAAAACGCAAAGCAGTTTCTATTGCTGAAAAGCTTGAACAAGAGAATCTGAGACTGGAGCCAAGATCAAGGAGCTTACTATGCTGGAAAGCATCAAGAGTAACCTGTCGGAAGCTGTCACGCTTGAAAATCCGACCCCGAAAACCACGTGCATTGCTGAACCTTGTCTCATGTGGGAAATGTCTCTCTACAAAATCTCCAAGGTAG 3783 0.4282 MTRAVRNRVLKDANGDISDHLRNHIHLTNCIHLKNHMHKNSPILADRSIMRDLVVLQRSRSLRDPSASPPSWHSPSVADVHFRRVENDAMVQGGRRSVGVERRKEGRRLSGTSPPLVNLGTSRAASGEASRGNDGVLATSERGSTSVMGDGRRVGREATGRKSDRPDYLDVSQEQPLNQAGKSLAEDVISRHSESKERRSRQRGKNVQDVQVKTLSEQLNDVPLDSDDLASSNIHFRGRYPRQGKIIEEAEAGIHGHGRGMNRVKRRKFRNTRRARVATSSRDIGAENELSVASNSLAQGTTLPKYHSEEVNDYADENVTRAPKNGCGIPWNWSRIHHRGKTILDMAGRSFSCGLSDSRLKKGTLNANGRNISEMPLASEQSSSCTKSDAEVLPLLPEASGSHGSTENACWDHDYSGELGLFGDNLFKHDIDSDLASEARSGNQHKLRGNRRSRHQSLTQKYMPRTFRNMVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCNSSEHPKPCGFCNYCIAHDMGKSRNIREIGPVSNFDSDSIMDLLDSMIVSPLPSQYKVFIFDDCDTLSADCWNAISKVIDRAPRRVVFMLVSSSLDVLPHIIISRCQKFFFPKLKDADIIYTLQWIATKEGLEIDKDAMKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVGLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGTYDFTKERRRRKFFRRQPLSKEDMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAPDQQYVLPTSSDNSFNHSPLALKNADGREAARIGGNPVEIPNEARRVSMDARIENFYAGSSVDRMTKGLSSEKRRLSVSGFAPQHTYSHATNNIRMNERQIFGKNHKEIEEIWLQVLERIPITGLRKFLHKEGKLISVSFGAAPTVQLMLSSQQTKSTAERFTGPISQAFESILGSSITIEIRCDSNKDEGSAVQLPLILPAVNDGSSQIRDLNGVGTQAHPALTDSVGNRRWEEAASQVEHKNNEQQVDAHATPYRSLEGTSIGHASASQKKPIVLERRKLTDLNGVGTQVRRELTDSVGNRRGEIVEEAASQVEHKNNEQQVDAHATPYRSLEGTSIGHASASQKKPIVLDRRKLREQGHSQSLVRSKVSLAHVIQQAEGQRSGWSKRKAVSIAEKLEQENLRLEPRSRSLLCWKASRVTCRKLSRLKIRPRKPRALLNLVSCGKCLSTKSPR 1260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4183g00031 1260 MobiDBLite consensus disorder prediction 114 128 - -
Gabi4183g00031 1260 Gene3D - 631 693 - -
Gabi4183g00031 1260 CDD HLD_clamp_pol_III_gamma_tau 630 693 IPR045085 -
Gabi4183g00031 1260 Pfam DNA polymerase III, delta subunit 473 630 - -
Gabi4183g00031 1260 MobiDBLite consensus disorder prediction 88 209 - -
Gabi4183g00031 1260 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 459 866 - -
Gabi4183g00031 1260 SMART AAA_5 489 630 IPR003593 GO:0016887
Gabi4183g00031 1260 SUPERFAMILY post-AAA+ oligomerization domain-like 701 804 IPR008921 GO:0003677|GO:0006260
Gabi4183g00031 1260 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 493 677 IPR027417 -
Gabi4183g00031 1260 Coils Coil 766 793 - -
Gabi4183g00031 1260 MobiDBLite consensus disorder prediction 154 169 - -
Gabi4183g00031 1260 FunFam DNA polymerase III subunit gamma/tau 452 629 - -
Gabi4183g00031 1260 Gene3D - 448 627 IPR027417 -
Gabi4183g00031 1260 MobiDBLite consensus disorder prediction 187 206 - -
Gabi4183g00031 1260 FunFam DNA polymerase III subunit gamma/tau 631 693 - -
Gabi4183g00031 1260 Pfam DNA polymerase III subunits gamma and tau domain III 686 804 IPR022754 GO:0003887
Gabi4183g00031 1260 MobiDBLite consensus disorder prediction 438 457 - -
Gabi4183g00031 1260 NCBIfam DNA polymerase III subunit gamma/tau 456 804 IPR012763 GO:0003887|GO:0005524|GO:0006260|GO:0009360
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4183g00031 Gabi-Chr4183 298078 305437 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4183g00031 456 754 Core DNA Replication Machinery Family AT1G21690 23.529 9.60e-14 72.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4183g00031 - - gmx:100809005 1810.81