Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4183g00030 ATGACTCGGGCTGTCCGCAATAGGGTACTAAAGGATGCCAATGGTGATATTAGTGATCATCTACGCAACCACATCCATTTAACAAATTGTATTCACTTGAAGAACCACATGCACAAGAACAGCCCCATACTGGCTGATAGGTCAATCATGAGGGATCTTGTTGTGCTGCAAAGATCACGCTCTCTCAGGGACCCTTCTGCGAGTCCTCCATCATGGCACTCACCTTCTGTAGCTGATGTACATTTCAGAAGAGTTGAAAATGATGCCATGGTTCAGGGGGGAAGAAGGTCTGTAGGTGTTGAGCGCAGGAAGGAAGGGAGGAGATTGTCTGGAACCTCACCACCCTTGGTGAATTTAGGTACATCAAGAGCTGCTTCAGGTGAGGCTAGTAGGGGTAATGATGGGGTACTGGCAACTAGTGAACGTGGTAGCACGAGTGTAATGGGCGATGGGAGGAGAGTTGGGAGAGAAGCAACTGGTAGGAAGAGTGATAGGCCTGATTATTTGGATGTTAATGTTATTTCAAGGCATTCTGAATCTAAAGAGAGAAGGAGCAGACAGCGGGGGAAGAATGTTCAGGATGTTCAAGTTAAGACCCTTTCTGAGCAGCTGAACGATGTTCCATTGGATAGTGATGATTTAGCATCATCAAACATTCATTTTCGAGGAAGGTATCCAAGACAGGGGAAAATTATTGAGGAGGCAGAGGCCGGCATACATGGTCATGGCAGGGGAATGAATAGAGTAAAAAGGCGTAAATTTCGAAACACAAGAAGAGCTCGGGTTGCTACATCATCAAGAGATATTGGAGCTGAGAATGAATTGTCTGTGGCTTCCAACTCATTGGCTCAGGGTACAACTCTCCCCAAATATCACTCGGAGGAGGTTAATGATTATGCAGATGAAAATGTTACTAGAGCTCCAAAAAATGGGTGCGGCATTCCTTGGAATTGGTCCAGAATTCATCATAGAGGTAAAACAATCCTTGACATGGCTGGGAGAAGTTTTTCTTGTGGTTTATCTGACTCTAGGTTAAAGAAAGGGACATTAAATGCCAATGGAAGAAATATTTCTGAGATGCCTTTGGCATCCGAGCAATCAAGCTCGTGTACTAAATCTGATGCTGAGGTACTACCTTTACTACCTGAGGCATCTGGATCTCATGGAAGCACTGAAAATGCTTGTTGGGACCACGATTATTCTGGGGAACTAGGTCTCTTTGGTGATAATTTGTTCAAGCATGATATCGATTCTGACCTTGCTTCTGAAGCTAGATCTGGCAACCAGCACAAGTTGAGAGGGAATCGTCGTAGTAGACACCAAAGCCTAACACAAAAATATATGCCGCGAACATTCAGAAATATGGTTGGACAGAATTTAGTGGCACAAGCTCTTTCAAATGCAGTAATGAGAAGGAAAGTTGGATTGCTATATGTGTTTTATGGTCCCCATGGCACTGGAAAAACTTCCTGTGCTCGCATATTTGCCAGAGCTTTGAATTGCAATTCTTCAGAACACCCAAAACCTTGTGGCTTTTGCAATTATTGCATAGCACATGATATGGGCAAGAGTAGAAATATAAGAGAAATTGGTCCAGTCAGTAATTTTGACTCTGATAGCATCATGGATCTACTTGACAGTATGATTGTTTCCCCGCTTCCGTCACAGTACAAAGTGTTTATTTTTGATGACTGTGATACTCTGTCAGCAGATTGTTGGAATGCTATATCGAAGGTCATAGATCGAGCACCTAGGCGCGTGGTTTTTATGCTTGTCAGTTCTAGTCTTGATGTCTTGCCTCATATAATAATATCCAGGTGCCAAAAATTCTTTTTCCCAAAGCTGAAGGATGCAGATATTATATATACACTGCAGTGGATTGCAACCAAAGAAGGTCTAGAAATTGATAAGGATGCCATGAAACTCATTGCATCAAGATCAGATGGATCATTGAGAGATGCTGAGATGACCCTTGAACAACTTAGTTTGCTTGGGCAGAGAATATCTGTTCCTCTTGTTCAGGAACTGGTAGGGCTTATCTCTGATGAGAAATTGGTGGATCTGCTTGATTTGGCATTATCTGCAGACACAGTTAACACTGTGAAGAATTTGAGAGTGATCATGGAAACTGGTGTTGAGCCATTAGCTTTAATGTCACAACTTGCTACCGTAATTACTGATATACTTGCTGGGACCTATGATTTCACAAAAGAAAGGCGAAGAAGGAAGTTCTTCCGGAGACAGCCATTGTCCAAAGAAGACATGGAAAAGCTTCGCCAAGCTCTGAAAACTTTATCTGAAGCTGAGAAGCAGTTGAGGATGTCCAATGACAAGCTAACGTGGTTGACAGCTGCATTGCTTCAACTTGCTCCTGACCAGCAATATGTGTTGCCTACTTCATCTGATAATAGTTTCAACCATAGTCCCTTGGCTCTAAAAAATGCAGATGGGAGAGAAGCAGCTAGAATAGGTGGTAATCCTATTTTTGGTAAAAACCATAAAGAAATTGAAGAGATATGGTTACAGGTGCTTGAGAGGATTCCAATTACTGGTCTGAGAAAATTCTTGCATAAAGAAGGCAAGCTGATCTCTGTTAGTTTTGGGGCAGCTCCAACTGTGCAGCTAATGCTTAGTTCTCAACAGACCAAATCTACTGCTGAGAGGTTCACAGGTCCCATCTCACAAGCATTTGAATCTATCCTTGGATCTTCTATAACAATAGAAATTAGATGTGATTCAAATAAAGATGAAGGCTCAGCTGTTCAACTGCCTCTTATATTGCCTGCTGTCAACGATGGTTCGTCCCAGATTAGAGACTTAAATGGTGTTGGCACTCAAGCTCATCCTGCACTAACTGATTCTGTTGGAAATAGAAGGTGGGAAGAGGCAGCTTCTCAAGTGGAGCACAAGAATAATGAGCAGCAGGTTGATGCTCATGCAACACCTTATAGAAGCCTAGAAGGTACAAGCATAGGACATGCATCAGCTTCCCAAAAAAAGCCAATTGTTTTAGAGCGAAGAAAGCTTACAGACTTAAATGGTGTTGGCACTCAAGTTCGTCGTGAACTAACTGATTCTGTTGGAAATAGAAGGGGTGAAATTGTAGAAGAGGCAGCTTCTCAAGTGGAGCACAAGAATAATGAGCAGCAGGTTGATGCTCATGCAACACCTTATAGAAGTCTAGAAGGTACAAGCATAGGACATGCATCAGCTTCCCAAAAAAAGCCAATTGTTTTAGACCGCAGAAAGCTCAGGGAGCAGGGTCATAGTCAAAGTCTTGTAAGAAGTAAGGTATCCCTTGCTCATGTAATCCAGCAGGCCGAAGGTCAGCGAAGTGGGTGGTCAAAACGCAAAGCAGTTTCTATTGCTGAAAAGCTTGAACAAGAGAATCTGAGACTGGAGCCAAGATCAAGGAGCTTACTATGCTGGAAAGCATCAAGAGTAACCTGTCGGAAGCTGTCACGCTTGAAAATCCGACCCCGAAAACCACGTGCATTGCTGAACCTTGTCTCATGTGGGAAATGTCTCTCTACAAAATCTCCAAGGTAG 3549 0.4297 MTRAVRNRVLKDANGDISDHLRNHIHLTNCIHLKNHMHKNSPILADRSIMRDLVVLQRSRSLRDPSASPPSWHSPSVADVHFRRVENDAMVQGGRRSVGVERRKEGRRLSGTSPPLVNLGTSRAASGEASRGNDGVLATSERGSTSVMGDGRRVGREATGRKSDRPDYLDVNVISRHSESKERRSRQRGKNVQDVQVKTLSEQLNDVPLDSDDLASSNIHFRGRYPRQGKIIEEAEAGIHGHGRGMNRVKRRKFRNTRRARVATSSRDIGAENELSVASNSLAQGTTLPKYHSEEVNDYADENVTRAPKNGCGIPWNWSRIHHRGKTILDMAGRSFSCGLSDSRLKKGTLNANGRNISEMPLASEQSSSCTKSDAEVLPLLPEASGSHGSTENACWDHDYSGELGLFGDNLFKHDIDSDLASEARSGNQHKLRGNRRSRHQSLTQKYMPRTFRNMVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCNSSEHPKPCGFCNYCIAHDMGKSRNIREIGPVSNFDSDSIMDLLDSMIVSPLPSQYKVFIFDDCDTLSADCWNAISKVIDRAPRRVVFMLVSSSLDVLPHIIISRCQKFFFPKLKDADIIYTLQWIATKEGLEIDKDAMKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVGLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGTYDFTKERRRRKFFRRQPLSKEDMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAPDQQYVLPTSSDNSFNHSPLALKNADGREAARIGGNPIFGKNHKEIEEIWLQVLERIPITGLRKFLHKEGKLISVSFGAAPTVQLMLSSQQTKSTAERFTGPISQAFESILGSSITIEIRCDSNKDEGSAVQLPLILPAVNDGSSQIRDLNGVGTQAHPALTDSVGNRRWEEAASQVEHKNNEQQVDAHATPYRSLEGTSIGHASASQKKPIVLERRKLTDLNGVGTQVRRELTDSVGNRRGEIVEEAASQVEHKNNEQQVDAHATPYRSLEGTSIGHASASQKKPIVLDRRKLREQGHSQSLVRSKVSLAHVIQQAEGQRSGWSKRKAVSIAEKLEQENLRLEPRSRSLLCWKASRVTCRKLSRLKIRPRKPRALLNLVSCGKCLSTKSPR 1182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4183g00030 1182 MobiDBLite consensus disorder prediction 114 128 - -
Gabi4183g00030 1182 CDD HLD_clamp_pol_III_gamma_tau 615 678 IPR045085 -
Gabi4183g00030 1182 Gene3D - 616 678 - -
Gabi4183g00030 1182 FunFam DNA polymerase III subunit gamma/tau 437 614 - -
Gabi4183g00030 1182 MobiDBLite consensus disorder prediction 423 442 - -
Gabi4183g00030 1182 Coils Coil 751 778 - -
Gabi4183g00030 1182 NCBIfam DNA polymerase III subunit gamma/tau 441 789 IPR012763 GO:0003887|GO:0005524|GO:0006260|GO:0009360
Gabi4183g00030 1182 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 444 839 - -
Gabi4183g00030 1182 FunFam DNA polymerase III subunit gamma/tau 616 678 - -
Gabi4183g00030 1182 Pfam DNA polymerase III subunits gamma and tau domain III 671 789 IPR022754 GO:0003887
Gabi4183g00030 1182 Pfam DNA polymerase III, delta subunit 458 615 - -
Gabi4183g00030 1182 MobiDBLite consensus disorder prediction 88 169 - -
Gabi4183g00030 1182 MobiDBLite consensus disorder prediction 154 169 - -
Gabi4183g00030 1182 SMART AAA_5 474 615 IPR003593 GO:0016887
Gabi4183g00030 1182 MobiDBLite consensus disorder prediction 175 194 - -
Gabi4183g00030 1182 Gene3D - 433 612 IPR027417 -
Gabi4183g00030 1182 SUPERFAMILY post-AAA+ oligomerization domain-like 686 789 IPR008921 GO:0003677|GO:0006260
Gabi4183g00030 1182 MobiDBLite consensus disorder prediction 175 191 - -
Gabi4183g00030 1182 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 478 662 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4183g00030 Gabi-Chr4183 298078 305437 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4183g00030 441 739 Core DNA Replication Machinery Family AT1G21690 23.529 6.12e-14 72.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4183g00030 - - gmx:100793832 1656.34