Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4183g00027 ATGGCTTCAGGGGCTATTTTCTCGTCGCTGCGGCGGAGAAGGTCGCCGACGTTGGAAGCGTTTCTTGCCCCCGTTGACCTGAGCGACGTTGCCCTGGTTCAAACCCTTGTTTCCGTGGTCAGCGAGCTTGTGTCGTGCTTTTCAAAGCGCTCCTTCCACTTCCAGCGCAAGAACTCGCGGTCTCTGATCCGAAAGGTGGAGGTTTTTCAGTTGCTTTTGGAGTATTTGAGTGATTCTGGAACGTGTCTTCCACCTACCGCGGTGCTTTGTCTTAAGGAGCTTTATCTGCTGCTGTATCGGTCCAAGATTCTCCTTGATTATTGCGCGCAATCGAGTAAGTTGTGGCTTTTGCTTCAGAACCATTCAATTTCTGGTCACTTCCATGATTTGAACCAAGAGATTTCGACCCTTATGGATGTTTTTCCGATTAAGGATGTTGAGTTGAGTAAGGATGTCAGGGAACAGGTTGAGCTGTTGCAGAAGCAATCAAGGAGAGCTAAGCTCTTTATAGACATGAAAGATGATGCTCTCAGGATCCGCTTCTTTTCATTTCTTGATGAGTTTGAGAATGGTCGGATTCCTGGTTCAGCTGAATTACAATCTTTCTATGTTGAGAAATTGCAGATTCTGGATGCTACGAGTTGTAGAGCTGAAATTGAAGCTTTGGAGGAGCAGATTGTTAATCATGAGGGTGATATTGAGCCTACAATTTCTGTGCTTAACGGGTTGGTGGCCATGACTCGGTATTGCAGATTTTTGCTTTTTGGATTTGAGGAAGATGAACTTGATTTGGAAAATGGAAGTCAGAAGAAGCGTAAAAAGAGATTGATTACTAAAGAAATTGCTGAAACATTTTTAACTGTTCCAAAGGACTTTTGCTGTCCAATATCATTGGATATGATGAGAGACCCAGTGATAATTTCCACAGGTCAAACTTATGATAGGAGTTCCATTTCCCGGTGGTTGGATGAAGGGCACACAACTTGCCCAAAAACAGGTCAAATGCTTGCCCACACTCGCGTTGTTCCTAACCGTGCTCTGAGGAATTTGATTGTGCAGTGGTGCACTGCACATGGAATTCCCCTTGACCCCCCAGAGGTCATGGATGCAATGGTTGAAGCTTTTGCATCAGCTTGTCCCACCAATGCTGCCCTTGAAGCCAACAGAGCCACGGCAACACTTCTCATTCAACAGCTAGCTAATGGATCACAATCTGGAAAGACTGTAGCCGCTCGGGAGATACGATTGCTGGCAAAAACTGGAAAAGAAAACCGTGCCTTCATTGCAGAAGCAGGAGCAATTCCATATCTTAGCAACTTACTTTCATCCCCTAATGCTGTTGCCCAGGAGAATTCCGTGACCGCATTGCTCAACCTATCCATTTTTGAGAAAAACAAAAATAGGATCATGGATGAGGAAGGTTGTCTGGGATCAATTGTTGATGTGTTGAGATTTGGGCACACAACAGAAGCAAGGGAAAATGCTGCTGCGACATTGTTCAGCCTATCTGCCGTTCATGACTACAAGAAAATAATTGCAGATAAGATGGGAGCTATTGAAGCCCTTGCAGGGCTATTGCAAGAAGGGACACCAAGGGGAAAGAAGGATGCTGTCACAGCTTTATTTAATCTTTCCACACACACTGAGAATTGTGTTAGAATGATAGACGCAGGTGCAATAACAGCTCTAGTTGGGGCTTTGGGGAATGAAGGAGTTGCTGAGGAAGCAGCAGGTGCATTGGCCTTGATAGTTAGGCAACCCATTGGGGCCAAAGCAGTAGTGAGTGAGGAAGCAGCAGTTGCTGGATTGATTGGAATGATGCGTTGTGGAACACCAAGAGGTAAAGAGAATGCGGTGGCGGCCTTGCTTGAGTTGTGCCGGAGTGGCGGTGCAGCTGCAACAGAAAGGGTGGTTAAGGCGCCAGCTTTGGCTGGATTACTTCAAACCCTGCTTTTTACAGGGACAAAGAGGGCAAGAAGAAAAGCAGCTTCACTTGCTAGAGTGTTTCAGAGATGTGAATATGCATCTATGCACTATGGTGGATTAGGTGTAGGCTATGCATTTGCTAGCAATTCAGCTCCACCTAGGGATACAAGCTTTGCCGGTGATGTTTCAGTACCAATGTCCATTTCTGTACCTGTTTTATAG 2148 0.4576 MASGAIFSSLRRRRSPTLEAFLAPVDLSDVALVQTLVSVVSELVSCFSKRSFHFQRKNSRSLIRKVEVFQLLLEYLSDSGTCLPPTAVLCLKELYLLLYRSKILLDYCAQSSKLWLLLQNHSISGHFHDLNQEISTLMDVFPIKDVELSKDVREQVELLQKQSRRAKLFIDMKDDALRIRFFSFLDEFENGRIPGSAELQSFYVEKLQILDATSCRAEIEALEEQIVNHEGDIEPTISVLNGLVAMTRYCRFLLFGFEEDELDLENGSQKKRKKRLITKEIAETFLTVPKDFCCPISLDMMRDPVIISTGQTYDRSSISRWLDEGHTTCPKTGQMLAHTRVVPNRALRNLIVQWCTAHGIPLDPPEVMDAMVEAFASACPTNAALEANRATATLLIQQLANGSQSGKTVAAREIRLLAKTGKENRAFIAEAGAIPYLSNLLSSPNAVAQENSVTALLNLSIFEKNKNRIMDEEGCLGSIVDVLRFGHTTEARENAAATLFSLSAVHDYKKIIADKMGAIEALAGLLQEGTPRGKKDAVTALFNLSTHTENCVRMIDAGAITALVGALGNEGVAEEAAGALALIVRQPIGAKAVVSEEAAVAGLIGMMRCGTPRGKENAVAALLELCRSGGAAATERVVKAPALAGLLQTLLFTGTKRARRKAASLARVFQRCEYASMHYGGLGVGYAFASNSAPPRDTSFAGDVSVPMSISVPVL 715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4183g00027 715 Pfam U-box domain 288 358 IPR003613 GO:0004842|GO:0016567
Gabi4183g00027 715 SUPERFAMILY ARM repeat 391 669 IPR016024 -
Gabi4183g00027 715 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 517 559 IPR000225 GO:0005515
Gabi4183g00027 715 Gene3D - 27 144 IPR036537 GO:0007166
Gabi4183g00027 715 Gene3D - 512 671 IPR011989 -
Gabi4183g00027 715 PANTHER U BOX DOMAIN-CONTAINING 57 671 - -
Gabi4183g00027 715 SMART arm_5 547 585 IPR000225 GO:0005515
Gabi4183g00027 715 SMART arm_5 421 461 IPR000225 GO:0005515
Gabi4183g00027 715 SMART arm_5 506 546 IPR000225 GO:0005515
Gabi4183g00027 715 Pfam Armadillo/beta-catenin-like repeat 422 460 IPR000225 GO:0005515
Gabi4183g00027 715 SUPERFAMILY RING/U-box 277 361 - -
Gabi4183g00027 715 Coils Coil 212 232 - -
Gabi4183g00027 715 Gene3D - 391 511 IPR011989 -
Gabi4183g00027 715 FunFam RING-type E3 ubiquitin transferase 287 362 - -
Gabi4183g00027 715 ProSiteProfiles U-box domain profile. 287 361 IPR003613 GO:0004842|GO:0016567
Gabi4183g00027 715 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 432 474 IPR000225 GO:0005515
Gabi4183g00027 715 FunFam RING-type E3 ubiquitin transferase 364 686 - -
Gabi4183g00027 715 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 287 361 IPR013083 -
Gabi4183g00027 715 SMART Ubox_2 291 354 IPR003613 GO:0004842|GO:0016567
Gabi4183g00027 715 CDD RING-Ubox_PUB 289 341 IPR045210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4183g00027 Gabi-Chr4183 271141 273995 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4183g00027 1 715 U-box Gene Family AT1G29340 69.524 0.0 949
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4183g00027 - - gmx:100811153 1221.84