Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4183g00025 ATGGATGAAGCTCAGGGCAGTTCCAGTTCCCTGCCACCTTTCCTCGCCAAGACTTATGAGATGGTGGATGATCCTTCAACTGATTCCATTGTTTCATGGAGTGCCACCAATAAAAGTTTCATTGTCTTGAACCCACCAGAATTTGCAAGGGATTTGTTGCCCAAATTCTTTAAGCACAATAACTTCTCTAGTTTCATCAGACAGCTGAACACTTATGGCTTTAGAAAGATTGACCCAGAACAATGGGAATTTGCAAATGATGATTTTGTAAGAGGTCAACCACATCTTTTGAAGAATATCCATAGGCGCAAACCAGTTCATAGCCATTCTTTGCAGAATCTCCAAGGTCAAGGGGCTTCTCCACTCACTGAATCGGAACGGCAGAGTTTGAAAGATGAGATGGAGAAGCTTAAACATGATAAAGAACAACTTCTTCTGGAGTTGCAGAGACATGAAGAGGAGTGGAAAATGTATGAGGTACAAATGCAGTGCTCAAAGGATCGTTTGGAAAAGTTGGAAAAGAAGCAACAAGATATGCTCTCTTCTGTTTCTCAAGTGTTGCACAAACCTGGAATTGCCTTAAATCTCTTGCCGCTGATAGAAAACATGGATAGAAAACGAAGGTTGCGGAGAAGTGGTCACTTTAGTGATGAAGCTAGCATTGAAGATCCCATGGAAAGTTCGCAAGTGTTACCTAGAGATCATGCAGAGAGTTGCTCTGATTTCACAGTAAACATGGAGCGATTGGATCTGCTTGAATCATCCGTGGTGTTCTGGGAGAATATTGCACATGATGTTGTTGACTCCTTTGTTCCAAGTCATTCAAACATGGACTTTGATGAATCTACAAGTTGTGCAGATAGTCCAGCTTTATCTTGTGTGCAACTAGATGTTGAAGTTCTGCCTAAGTCATCTGGAATCGACATGAACTCTGAGCCAGCCGTGGCTGCTGTTCCTGATCTTGCTACATCAAAAGAACAACCTGTGGGAACAACCCCTGTGGCTACTACTGGTGTTAATGACGTATTCTGGGAACAATTTTTGACAGAGAATCCCGGTACATCCGAAATGCAGGAAGCACAGTCAGGAAGAAAGGATTCTGATGGCAGAAATAATGATGGAAAAACTGGTGACCATGGAAGATTTTGGTGGAACATTAGGAATGTAAATAACCTTCCAGAACAGATGGGGCATTCTTAG 1200 0.4233 MDEAQGSSSSLPPFLAKTYEMVDDPSTDSIVSWSATNKSFIVLNPPEFARDLLPKFFKHNNFSSFIRQLNTYGFRKIDPEQWEFANDDFVRGQPHLLKNIHRRKPVHSHSLQNLQGQGASPLTESERQSLKDEMEKLKHDKEQLLLELQRHEEEWKMYEVQMQCSKDRLEKLEKKQQDMLSSVSQVLHKPGIALNLLPLIENMDRKRRLRRSGHFSDEASIEDPMESSQVLPRDHAESCSDFTVNMERLDLLESSVVFWENIAHDVVDSFVPSHSNMDFDESTSCADSPALSCVQLDVEVLPKSSGIDMNSEPAVAAVPDLATSKEQPVGTTPVATTGVNDVFWEQFLTENPGTSEMQEAQSGRKDSDGRNNDGKTGDHGRFWWNIRNVNNLPEQMGHS 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4183g00025 399 MobiDBLite consensus disorder prediction 109 125 - -
Gabi4183g00025 399 SMART hsfneu3 10 103 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gabi4183g00025 399 MobiDBLite consensus disorder prediction 107 127 - -
Gabi4183g00025 399 FunFam Heat shock transcription factor 1 7 104 - -
Gabi4183g00025 399 Coils Coil 127 161 - -
Gabi4183g00025 399 Gene3D - 6 104 IPR036388 -
Gabi4183g00025 399 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 6 280 IPR027725 -
Gabi4183g00025 399 SUPERFAMILY "Winged helix" DNA-binding domain 9 103 IPR036390 -
Gabi4183g00025 399 MobiDBLite consensus disorder prediction 361 377 - -
Gabi4183g00025 399 PRINTS Heat shock factor (HSF) domain signature 14 37 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gabi4183g00025 399 PRINTS Heat shock factor (HSF) domain signature 65 77 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gabi4183g00025 399 PRINTS Heat shock factor (HSF) domain signature 52 64 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gabi4183g00025 399 ProSitePatterns HSF-type DNA-binding domain signature. 53 77 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gabi4183g00025 399 Pfam HSF-type DNA-binding 14 103 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gabi4183g00025 399 MobiDBLite consensus disorder prediction 350 381 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4183g00025 Gabi-Chr4183 247089 250531 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4183g00025 7 398 HSF AT4G18880 53.383 7.70e-125 365
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Gabi4183g00025 HSF_DNA-bind 1e-31 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4183g00025 K09419 - gmx:100820566 621.313