Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4183g00019 ATGGCTGATAATTCATCAAGCAATGGAAACAACGAAGTGGTTTTAAATTTAAACGGTGATGCCTCCAAAAAGTGTGACGGCATCGAAGAAGACTGTGTGCCATTTTTGCAGAAGGTGGTGACAGAGGTGGTGGGGACGTACTTCTTGATATTTGCAGGATGTGGTTCGGTGGTTGTGAATCTTAACAACGACAAGGTGGTGACTCTTCCCGGGATTTCCATTGTTTGGGGACTCGCTGTTATGGTATTGGTTTATTCAGTTGGACACATCTCTGGTGCTCATTTCAACCCAGCTGTCACACTTGCTCATGCTTCCACCAAAAGATTTCCATGGAAGCAGGTGCCAGCATATATAATAGCTCAGGTGGTTGGATCCACACTTGCAAGTGGAACACTAAGACTTATATTCATGGGAAAGGATGACCATTTTGCCGGAACACTTCCCGCCGGATCTAACCTGCAAGCTTTTGTGGTCGAATTCATTATCACTTTCTACCTAATGTTCATCATTTCTGGAGTTGCCACCGATAACAGAGCGATTGGTGAGTTGGCTGGGCTTGCAGTTGGGTCAACGGTACTGCTAAATGTGATGTTTGCCGGGCCAATCACTGGAGCATCAATGAATCCAGCAAGAAGCTTGGGGCCTGCTATTGTGCACAGTGAATACAAAGGAATATGGATATACTTGGTCTCACCCATTCTGGGTGCTGTGGCTGGTACATGGACATATAATTTCGTCAGATACACAAACAAGCCAGTGCGTGAGCTCACCAAGAATGCCTCTTTTCTCAAAGGAAAAGGAAGATGTGGTTCGGTGGTTGTGAACCTTAACAACGACAAGGTGGTGACTCTTCCCGGGATTTCCATTGTTTGGGGACTCGCTGTTATGGTATTGGTTTATTCAGTTGGACACATCTCTGGTGCTCATTTCAACCCAGCTGTCACACTTGCTCATGCTTCCACCAAAAGATTTCCATGGAAGCAGGTGCCAGCATATATAATAGCTCAGGTGGTTGGATCCACACTTGCAAGTGGAACACTAAGACTTATATTCATGGGAAAGGATGACCATTTTGCTGGAACACTTCCCGCCGGATCTAACCTGCAAGCTTTTGTGGTCGAATTCATTATCACTTTCTACCTAATGTTCATCATTTCTGGAGTTGCCACCGATAACAGAGCGATTGGTGAGTTGGCTGGGCTTGCAGTTGGGTCAACGGTACTCCTAAATGTGATGTTTGCAGGGCCAATCACTGGAGCATCAATGAATCCAGCAAGAAGCTTGGGGCCTGCTATTGTGCACAGTGAATACAGAGGAATATGGATATACTTGGTCTCACCCATTCTGGGAGCTGTGGCTGGTACATGGGCCTATAATTTCATCAGATACACAAACAAGCCAATGCGTGAGCTCACCAAGAGTGCCTCTTTCCTCAAAGGAAAAGGAAGTGGTGGAGCTGAGTGA 1464 0.4604 MADNSSSNGNNEVVLNLNGDASKKCDGIEEDCVPFLQKVVTEVVGTYFLIFAGCGSVVVNLNNDKVVTLPGISIVWGLAVMVLVYSVGHISGAHFNPAVTLAHASTKRFPWKQVPAYIIAQVVGSTLASGTLRLIFMGKDDHFAGTLPAGSNLQAFVVEFIITFYLMFIISGVATDNRAIGELAGLAVGSTVLLNVMFAGPITGASMNPARSLGPAIVHSEYKGIWIYLVSPILGAVAGTWTYNFVRYTNKPVRELTKNASFLKGKGRCGSVVVNLNNDKVVTLPGISIVWGLAVMVLVYSVGHISGAHFNPAVTLAHASTKRFPWKQVPAYIIAQVVGSTLASGTLRLIFMGKDDHFAGTLPAGSNLQAFVVEFIITFYLMFIISGVATDNRAIGELAGLAVGSTVLLNVMFAGPITGASMNPARSLGPAIVHSEYRGIWIYLVSPILGAVAGTWAYNFIRYTNKPMRELTKSASFLKGKGSGGAE 487
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Gabi4183g00019 487 PRINTS Major intrinsic protein family signature 76 100 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gabi4183g00019 487 PRINTS Major intrinsic protein family signature 113 132 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gabi4183g00019 487 PRINTS Major intrinsic protein family signature 226 246 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gabi4183g00019 487 PRINTS Major intrinsic protein family signature 158 176 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gabi4183g00019 487 PRINTS Major intrinsic protein family signature 189 211 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gabi4183g00019 487 PRINTS Major intrinsic protein family signature 37 56 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gabi4183g00019 487 NCBIfam MIP family channel protein 42 243 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gabi4183g00019 487 NCBIfam MIP family channel protein 272 458 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gabi4183g00019 487 PANTHER AQUAPORIN NIP2-1 24 262 IPR034294 -
Gabi4183g00019 487 Gene3D Glycerol uptake facilitator protein. 263 474 IPR023271 -
Gabi4183g00019 487 Gene3D Glycerol uptake facilitator protein. 2 261 IPR023271 -
Gabi4183g00019 487 CDD MIP 37 246 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gabi4183g00019 487 ProSitePatterns MIP family signature. 309 317 IPR022357 -
Gabi4183g00019 487 SUPERFAMILY Aquaporin-like 34 257 IPR023271 -
Gabi4183g00019 487 Pfam Major intrinsic protein 279 458 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gabi4183g00019 487 Pfam Major intrinsic protein 33 243 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gabi4183g00019 487 CDD MIP 269 461 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gabi4183g00019 487 ProSitePatterns MIP family signature. 94 102 IPR022357 -
Gabi4183g00019 487 SUPERFAMILY Aquaporin-like 269 472 IPR023271 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Gabi4183g00019 Gabi-Chr4183 163579 188036 Dispersed/Tandem
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4183g00019 269 479 Major Intrinsic Protein MIP AT5G37810 63.033 3.33e-90 275
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4183g00019 K09874 - gmx:100786924 454.521