Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4183g00018 ATGGCTGGTAATTCATCAAGCAATGGAAACCACGAGGTGGTTTTAAATGTAAACAGGGATGACTCCAAAAAGTTTGACGACTCAGGCATCGAAGACTGTGTGCCATTTTTGCTGAAGTTGGTGGCAGAGCTGGTGGGGACGTACTTCTTGATATTTGCAGGATGTGCTTCGGTGGTTGTGAACCTTAACAACGACAAGGTGGTGACTCATCCTGGGATTTCGATTGTTTGGGGTCTTGCTGTTATGGTATTGTTTTATTCTGTTGGACACATCTCTGGTGCTCATTTCAACCCAGCTGTCACACTTGCTCATGCTTCCACCAAAAGATTTTCCTGGAAACAGGTGCTAGCATATATAGTAGCTCAGGTGGTTGGATCAACACTTGCAAGTGGAACACTAAGACTTATATTCAGTGGAAAGGATGACCATTTTGCAGGAACACTTCCTGCTGGATCTAACCTGCAAGCTTTTGTGGTCGAATTCATAATAACTTTCTACCTAATGTTCATCATTTCTGGAGTTGCCACCGATAACAGAGCGATTGGTGAGTTGACTGGGCTTGCAGTTGGGTCAACGGTACTGCTAAATGTGATGTTTGCAGGGCCAATCACTGGAGCATCAATGAATCCAGCAAGAAGCTTGGGGCCTGCTATTGTGCACAGTGAATACAGAGGAATATGGATATACTTGGTCTCACCCATTCTGGGTGCTGTGGCTGGTACATGGGCCTATAATTTCATCAGATACACAAACAAGCCAGTGCGTGAGCTCACCAAGAGCGCCTCTTTCCTCAAAGGAAAAAGAAGTGGTGGAGCTGAGTGA 822 0.4538 MAGNSSSNGNHEVVLNVNRDDSKKFDDSGIEDCVPFLLKLVAELVGTYFLIFAGCASVVVNLNNDKVVTHPGISIVWGLAVMVLFYSVGHISGAHFNPAVTLAHASTKRFSWKQVLAYIVAQVVGSTLASGTLRLIFSGKDDHFAGTLPAGSNLQAFVVEFIITFYLMFIISGVATDNRAIGELTGLAVGSTVLLNVMFAGPITGASMNPARSLGPAIVHSEYRGIWIYLVSPILGAVAGTWAYNFIRYTNKPVRELTKSASFLKGKRSGGAE 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4183g00018 273 CDD MIP 39 247 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gabi4183g00018 273 PANTHER AQUAPORIN NIP2-1 31 264 IPR034294 -
Gabi4183g00018 273 NCBIfam MIP family channel protein 42 244 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gabi4183g00018 273 SUPERFAMILY Aquaporin-like 35 258 IPR023271 -
Gabi4183g00018 273 PRINTS Major intrinsic protein family signature 159 177 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gabi4183g00018 273 PRINTS Major intrinsic protein family signature 77 101 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gabi4183g00018 273 PRINTS Major intrinsic protein family signature 114 133 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gabi4183g00018 273 PRINTS Major intrinsic protein family signature 227 247 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gabi4183g00018 273 PRINTS Major intrinsic protein family signature 190 212 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gabi4183g00018 273 PRINTS Major intrinsic protein family signature 38 57 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gabi4183g00018 273 ProSitePatterns MIP family signature. 95 103 IPR022357 -
Gabi4183g00018 273 Gene3D Glycerol uptake facilitator protein. 4 259 IPR023271 -
Gabi4183g00018 273 Pfam Major intrinsic protein 35 244 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4183g00018 Gabi-Chr4183 151051 152889 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4183g00018 39 265 Major Intrinsic Protein MIP AT5G37820 62.555 2.57e-99 291
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4183g00018 K09874 - gmx:100812577 456.832