Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4176g00073 ATGAAAGGGCGATCTCACCGCCCTCAGAGTTCGGACCCACCGGACGAATGGGTCGACGGTACCTGGACCGTGGACTGCATCTGCGGCGTCAACTTCGACGACGGCGAAGAGATGGTGAAATGCGACGAGTGCGGCGTGTGGGTGCACACGCGCTGCTCTCGTTATGTTAAGGGGGACGACACCTTCGTCTGCGACAAATGCAAGAGCAAGAACAACCGAGTTGAGAATAACACCGAGGAAACTGAGGTTGCCCAATTGTTAATCGAGCTCCCCACAAAGACTATGTCTTTGGAGAATAGCAATTCTCTTGCATCGAAAGTTGCATCTCATTCGCGCCGCCCTTTCAAGCTTTGGACTGATATACCCATGGAGGAGAGGGTTCACGTTCAAGGAATCCCCGGTGGTGATCCTTCTCTCTTTGCCGGCAAGAGCGTTTCCTCGATTTTCAGTCCACACTTATGGAAATGCACTGGTTATGTTCCCAAGAAGTTTAATTTTCAGTATAGGGAGTTTCCTTCTTGGGATGAGAATGAGAATGCACAAGATAATGATAATGGGGCTGGGGTTTTGTTCTCTTTCTCGAAAGAGACTACTACTGTCTTGGCTTCCCCTGTTGCGGCTTTGGTTGACATGAGATCCAGGGATGGCGATGACAGCAAGACGTCTTTCAAGGACATGAGCAATTTAGGCAGTGGCAGTGAAGATACACCGTATGCCCACAATTCCATTAAGAAGGAGAGGAGTTTGCTGAGGCCTCTTGTTGTTCATAGCAGTAAGGGAAGGAAAGAGGACTTCGGGACTTCCAATTCCAAAGACAGGAGTGGGAAGAAGCGGGTTAAGACTCCTGATAAAGAGGTAGATCTCAAGAGGAGAAGTTCACATTCTTCTAAAACAGACAGAGGTCCGAAGATTTTCAAGGCTGGCAATCGGAGCATAAGGAATAAAAACTTAAAAGACATTGTGGTTCAGGAATATAGTTTGAATGATTATTTTGCTGTGGATACCATCGTGGAAGAGCCAAATAACAACTTGACAGCTACTGAGGATTCTTCAGAAGCCTTTTATCCTGACACAACAAGACATAGTCTTTCTGTTGGAGATGTATTAGCAGGAGAAAAGACTGGCCATAAAGATCCTAGTTTGGTTGAGATGTCTTCTAAGACTGATGATGCTGTTACATCAGTTTTAAAGCATAATTATGTTGGAAATACTTCAGTTGAAGAAAAGGACGGAGATTGCTTGGCAGCTGATAATGCAGATGATACTTTAGTAGTAAGAAGCACTGTGAGTCCTAACATAGAAGATCATTGTGGTTCTGCACCCGAACTTGTGGAGAACCAAGTTTCTCAAGATTTTGACTGTAACCTGCGTCCTAGCCCTGCAAAATGCAAAGTTAAGGTGAATAGAGAAGAAGATGATGATAGTTTTAGGAAGATCTTGAATTTTCATTCTTCTCCTATAAGTGATCTTAAAAATAATGAAAAACCATGTGATCACACTTCTGATATTGTTAAAGTGAATGATGCTGTATTTCCCAGTTTACCATCATCTGAAAATAAGGTGGGAGATATTGACATATTGTCAGAAGTAGTTGCTGATGATCTTACCAATAAACCTGATGAATTATCTGGTGATTTTTGTCATGGAAAACAAGAACTGGAGGGGTCTGAAGGTTCATTGGAAACACAAAAGGGTTTTTCAGAAACAAAAGATGGTTCGGATTCTGCTAAAGATCCATCAAAAATTGAAGCACTTGGATGTCCACACACGTCAACCATGAAATCCAGATCATTGGCTCATGACTTTAAATCTGAAGATACTGAAATCCCCAATTCTTTTATAAAACATGGAGCGATGGATAATTGTAACATCCACATAAAGAATGAAAGTTGTTCGAGTGATGCTGCAAGGGATGAAATTCCAAGGAAGCCTGTAAGAGAGCGACAAAAATCCTCTTTAAATTCTAATTCAAAAGGATTGCATTCAAGCAGGAGTACGCAAAATTCTGTTTCAAAGCAAGTAAATTCAGATGCGAGAGATTCTGTTCATTGTTCATCTTCTAAGCCATCTCTGATACATAGTGAGGTTAATGCATCATTGCACCATCAAAAGGCTTTACCAGTGCAGAATAAGATTTCATCTTCAGTTCCACAGAAAGTTGAAAAGCTTAACCAAACAAACGTCCTTTCTTCCTCTAAGTTGAACCAGAGTCACGTGCTATCAATGAATCCTTCTCCAACTTCAAATTCTTCAATGCTGAGTGATGAAGAGCTTGCTTTGCTATTGCATCAAGAACTGAATAGTTCGCCCCGTGTACCTCGTGTACCCCGAGCACGCCATGCAGGTAGTTTGCCACAGTTGACTTCTACTAGTGCTACAAGCATGCTAATGAAGCGAACATCATCGGTTGGAGGAAAAGATCATTATTTGGGATCTAGACGAAAATCCAAGGATGCATCTAGAGATGGGTTTTGTAGTCCTCGAGAACTTGAAGATGAAGCTAAAAGGACAGAGAAGGAGAAGGGTTCATCTTCGTCTGATCAAAGGAAACAAGATATGGCATATGTGGAAGATGCATCTGTAAAGGAAGAAGGCCTTGCATCTATGACAGCTGTAAACTCTATCACTGACAATGTTGTTTCTGCCGCCTCTGCGATTGCAAACATTAGTCCACCCTCCCCTCCTGACGATCAGAATTTATCTGATGATGATACTGCAACTGCTGGAAGGCCAGTTCACCGTACCTTACCTGGCTTGATTAATGATATTATGAGCAAAGGCAAGCGTATGACATATGAGGAACTCTGTAATGCTGTGCTACCGCACTGGCAGAACTTGAGGAAGCATAATGGAGAGCGTTATGCATACACAAGTCACTCTCAGGCTGTTCTTGATTGCTTGAGGAACCGACATGAATGGGCAAGGTTGGTTGATCGTGGTCCAAAGACAAATTCTAATAGGAAAAGGCGTAAGCTGGATGCTGAAGAATCTGATGATAACGGATATGGCAAGGGAAGAACTGCAAAGGAGGTTGAAGGGAAGAACTTTGAGCTGCAAAAAGAAGAGTTCCCTAAAGGCAAGCGTAAAGCTCGAAAACGCAGGCGCCTGGCTCTTCAGGGAAGAGCAGTAAAGGATGTCAGGAGGAAACAAAAAGCTGACTCGCTAACCGAGGAGGATGTCGGTCAATTCTCCAATTCCAGTGAAGAGAGCATGTTTAGTGAGGATGAAATTCAGGTTGGCAGAATATGTCCAGCAGGAAGTACATCAGATGAGGCAGGTAGTGCCTGA 3288 0.4313 MKGRSHRPQSSDPPDEWVDGTWTVDCICGVNFDDGEEMVKCDECGVWVHTRCSRYVKGDDTFVCDKCKSKNNRVENNTEETEVAQLLIELPTKTMSLENSNSLASKVASHSRRPFKLWTDIPMEERVHVQGIPGGDPSLFAGKSVSSIFSPHLWKCTGYVPKKFNFQYREFPSWDENENAQDNDNGAGVLFSFSKETTTVLASPVAALVDMRSRDGDDSKTSFKDMSNLGSGSEDTPYAHNSIKKERSLLRPLVVHSSKGRKEDFGTSNSKDRSGKKRVKTPDKEVDLKRRSSHSSKTDRGPKIFKAGNRSIRNKNLKDIVVQEYSLNDYFAVDTIVEEPNNNLTATEDSSEAFYPDTTRHSLSVGDVLAGEKTGHKDPSLVEMSSKTDDAVTSVLKHNYVGNTSVEEKDGDCLAADNADDTLVVRSTVSPNIEDHCGSAPELVENQVSQDFDCNLRPSPAKCKVKVNREEDDDSFRKILNFHSSPISDLKNNEKPCDHTSDIVKVNDAVFPSLPSSENKVGDIDILSEVVADDLTNKPDELSGDFCHGKQELEGSEGSLETQKGFSETKDGSDSAKDPSKIEALGCPHTSTMKSRSLAHDFKSEDTEIPNSFIKHGAMDNCNIHIKNESCSSDAARDEIPRKPVRERQKSSLNSNSKGLHSSRSTQNSVSKQVNSDARDSVHCSSSKPSLIHSEVNASLHHQKALPVQNKISSSVPQKVEKLNQTNVLSSSKLNQSHVLSMNPSPTSNSSMLSDEELALLLHQELNSSPRVPRVPRARHAGSLPQLTSTSATSMLMKRTSSVGGKDHYLGSRRKSKDASRDGFCSPRELEDEAKRTEKEKGSSSSDQRKQDMAYVEDASVKEEGLASMTAVNSITDNVVSAASAIANISPPSPPDDQNLSDDDTATAGRPVHRTLPGLINDIMSKGKRMTYEELCNAVLPHWQNLRKHNGERYAYTSHSQAVLDCLRNRHEWARLVDRGPKTNSNRKRRKLDAEESDDNGYGKGRTAKEVEGKNFELQKEEFPKGKRKARKRRRLALQGRAVKDVRRKQKADSLTEEDVGQFSNSSEESMFSEDEIQVGRICPAGSTSDEAGSA 1095
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4176g00073 1095 MobiDBLite consensus disorder prediction 239 305 - -
Gabi4176g00073 1095 MobiDBLite consensus disorder prediction 223 238 - -
Gabi4176g00073 1095 SUPERFAMILY FYVE/PHD zinc finger 14 72 IPR011011 -
Gabi4176g00073 1095 ProSitePatterns Zinc finger PHD-type signature. 26 67 IPR019786 -
Gabi4176g00073 1095 MobiDBLite consensus disorder prediction 650 688 - -
Gabi4176g00073 1095 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 11 75 IPR013083 -
Gabi4176g00073 1095 MobiDBLite consensus disorder prediction 1020 1095 - -
Gabi4176g00073 1095 MobiDBLite consensus disorder prediction 783 800 - -
Gabi4176g00073 1095 MobiDBLite consensus disorder prediction 633 688 - -
Gabi4176g00073 1095 MobiDBLite consensus disorder prediction 978 1008 - -
Gabi4176g00073 1095 MobiDBLite consensus disorder prediction 550 598 - -
Gabi4176g00073 1095 MobiDBLite consensus disorder prediction 808 857 - -
Gabi4176g00073 1095 MobiDBLite consensus disorder prediction 887 905 - -
Gabi4176g00073 1095 PANTHER UNCHARACTERIZED 1 1087 - -
Gabi4176g00073 1095 MobiDBLite consensus disorder prediction 1057 1073 - -
Gabi4176g00073 1095 MobiDBLite consensus disorder prediction 633 649 - -
Gabi4176g00073 1095 MobiDBLite consensus disorder prediction 212 305 - -
Gabi4176g00073 1095 MobiDBLite consensus disorder prediction 1039 1056 - -
Gabi4176g00073 1095 MobiDBLite consensus disorder prediction 769 857 - -
Gabi4176g00073 1095 MobiDBLite consensus disorder prediction 887 913 - -
Gabi4176g00073 1095 SMART PHD_3 25 68 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4176g00073 Gabi-Chr4176 696235 703328 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4176g00073 24 67 PHD Transcription Factor Family AT5G22260 42.553 9.40e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4176g00073 - - gmx:100810855 1527.69