Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4176g00064 ATGAGGTTACTGATGGGGACTGAGCTTATGAGAATATGTGTCAAAGAAGATAATGATGACTTTCCATCAGTTCCACCAGGTTTTGAGTCATATACATCTTTCTCCCTGAAGAGGGTAGAAGAGAATGAGAAACAAGGCGATAAGAATATGACCAGTTGTTCAGCCTCTACAAGTGCTTCTGAATCACAATCAACTCAGGTGGAAAATGATGTTGAAGTTCGTGGTACTGCAAAGGTTCCTAGATCCGTTCGAGGAAGACCATGGATTAACTATGGTCGGTTTGAGAACAGTTCAGAAGAAGACTCTGATTGTGAGCGGCTTGATCAAAATTTCTCCTCAAGACCTTGTCTCCCCAGGGGAGTCATCCGTGGATGTCCAGATTGCAGTAATTGCCAAAAGGTTGTTGCCAGATGGCGACCGGAAGATGCCCGTAGGCCAAATCTCGAGGATGCTCCTGTTTTTCGCCCCACTGAAGAGGAGTTTCAAGATACTTTGAAATATATATCAAGCATTCGCGCCAGTGCTGAGCCATATGGAATTTGTCGCATTGTTCCTCCGTCTTCTTGGAAACCCCCTTGTCCTCTCAAGGAAAAAAGTGTATGGGAGGGTTCTAAATTTGCTACTCGTGTTCAGAGGATTGACAAACTTCAGAATCGTGAGTCAGTGAGAAAGATATCAAGGATTCAAAGTAATATGAAAAGGAAAAGGAGAAGATGCACAAGAATGGGAATGGATAATGGCACTGGAAGGGGACCTAATATGGGATTTTGTGAAGCTGAAAGGTTTGGGTTTGAACCTGGTCCAGAATTTACCTTAGAGACATTTCAGAGATATGCGGATGATTTTAAGGCCAAATACTTCAGACAAAATGATAATATATCTCATTTAGGTGCTAATACAACAATTTTGAATGGCACCTTGGAGCCTTCTGTGGAGAACATAGAGGGTGAATATTGGCGGATGGTCGAGAATCCTACTGAAGAAATTGAGGTGCTTTATGGAGCTGATCTGGAAACTGGGGATTTTGGGAGTGGTTTTCCTAGTAAGTCTAGTCATGTTAGTTCTGCATCACATGAACATTACAGAAAAGCCGGCTGGAATTTAAATAACTTTGCAAGGCTACCTGGATCTGTACTCTCTTATGAAAGTAGTGATATATCTGGTGTTCTGGTGCCATGGTTGTATGTAGGAATGTGCTTTTCCTCCTTTTGTTGGCATGTGGAAGATCACCATTTATATTCCCTGAATTATATGCATTGGGGTGCTCCAAAAATGTGGTATGGTGTCCCTGGAAAAGATGCTTGCAAATTGGAAGAGGCCATGAGAAAGCATTTACCTGAACTTTTTGAAGAACAACCTGACTTGCTTCATAAGCTGGTCACTCAGCTTTCTCCTTCTATCCTTAAGTCTAAAGGAGTGCCAGTTTATAGGTGTGTCCAAAACGCTGGTGAATTTGTTCTGACATTTCCTCGAGCCTACCACTCTGGGTTCAATTGCGGCTTCAACTGTGCTGAGGCTGTTAATGTAGCTCCTGTTGACTGGCTGCCCCATGGGCATATCGCTATAGAGCTGTACCGGGAGCAGGGACGCAAGACTTCTATATCCCACGATAAGCTGTTGCTTGGGGCTGCAAGGGAAGCAGTACGAGCTCAATGGGAGCTTAATTTGCTGAAGAAAAATACTTCAGATAATCTACGATGGAAAGATGTCTGTGGAAAGGATAGCCTTCTGGCAAAAGCACTCAAGATGCGTGTTGAGATGGAGCGAGCAAGAAGGGAATTTCTCTGCAGTTCTTTACAGGCATTAAAAATGGAGAGTGGTTTTGATGCTACAAGTGAAAGGGAATGCAACATTTGCTTTTTTGATTTACATCTATCTGCAGCTGGTTGTCACTGTTCCCCAGATACATATGCTTGCTTGGATCATGCAAAGCACTTTTGTTCATGCCCTTGGGATTCCAAATTTTTCCTCTTTCGTTATGATATTAGTGAACTAAATATTCTTGTTGAGGCATTGGAAGGAAAATTGAGCGCGGTATACAGATGGGCAAAATTCGATCTTGGGCTGGCATTAACTTCTTATGTCTCAGTAGACAAGGAAACAATACTTAAGGAATTGAGAACGCATTCGTCCAACTTGTCTCATTCTTCCGGGGCCACTTTGCATCCTTCAAATAAATTTATTGAAGATTCTCAGTTGATAGATGTTCCAATAGAGAATCAAGCAAATCCAGCACATAGCGAAGATCAGAGCTATCTTCAACAGAGGAAATCTGCAGAAGCTGTGTCTCCTTTGAGTCACATGAAGGAACTGTTAACAATTAATTGCTCAAAACCAACATGTGAGGCGGCTAATCTTAATATCTGTGTTAATAAAGAAGGATCTGTTATTTGCAGAACAAAGTTGAGAACCCCTGGTAGTCAATTGTCTCAAGAGGATTCATCATATGCTTTATCTCTGCCTCTAGCTCAAAATGGAGGTGAGAAAAGTTCACTCTACAGGCACAACAGTATTATACTTCTTAGTGACGATGAAGATGATAAAATGAAGATGCCAGATTCAAATAGAAGGAAGGATTCTTCTCAGATGCTTCAAGGTTCTAGAGATAAAGCAAGCCCATGTAACAATATAGAAAATACACACTTGACCATCCCTGTGACAGATGCTGCTGTGATGGGTGAAAAGGATGTTATTGCATTGCCTCGCAAAGATAAAAGTCCTGACTCAACTCAGCTTTTGCATGTGAAACAGGAATGTCATGAAAACAGAGGACCAGTTCTTGCTTCTACCCCAGTAGATCTTTCTTTTCATATAGGTCTTACTAGTGCAGAATCAGTTGGAAATATTCCAGCTTCTTCAATAGTAGAGGCTGGCGGTCATCGTTTGGAAAGTTCAGGGGTTTGTCCTGTGGACCCACAACCTTCTGGCACTATCAAGGTTAAAAATGAGGATAATGATGAAAAGTTTGGAGGATGTGCCACCTCTAATGTAGCAGACAATGTAAGAGCCATTAATGGAAACTTTTCTTGCAACCTAAACAATAATCGTCAGAAAGGACCTCGTATTGCAAAGGTTGTCCGGCGTATCAACTGCAATGTTGAACCTTTAGAATTTGGAGTTGTGCTTTCTGGAAAGTTATGGTGTAGCAGTCAAGCTATATTTCCAAAGGGATTTAGAAGCCGTGTTAGATACATAAGTGTCTTAGATCCATCCAGTATGTGCTACTATATTTCAGAAATTCTTGATGCTGGACGTGATCGACCTCTATTTATGGTTTCCTTGGAAAATTGTCCAAGTGAGGTCTTCATTCATTTGTTGGCTACAAGATGCTGGGAACTGGTAAGAGAGAGAGTGAATCAGGAGATCACAAAGCAACATAAGCTGGGAAGAAAGGGTCTTCCTCCTTTACAGCCTCCTGGCAGCCTTGATGGCTTTGAAATGTTTGGGTTTTCTTCACCAGCAATAGTGCAGGCTATTGAGGCACTGGATCGATGTCGAGTTTGTAATGGATATTGGGACTCACGGCCCTACTCCAGGCCTCAAGGGCAGTTTTCACAAGCTTACCAAACCGATGTTAATGGTGGAAATGGTCAAGGGGTTCTCATGAATCAGCACATGCCCGTTGGAGTTGTTGCAATACTAAGGAACCTATTTAAAAAGGTTAATGCAGAAGAATTGAACTCATTGTATAGCATTCTTAGTGACAATATGCCAGCGGCTGACAGGGTCCTAATAGCGCAACTTCTCAATGAAGAAATTCACAAATCACAACCGCCCTAG 3780 0.4204 MRLLMGTELMRICVKEDNDDFPSVPPGFESYTSFSLKRVEENEKQGDKNMTSCSASTSASESQSTQVENDVEVRGTAKVPRSVRGRPWINYGRFENSSEEDSDCERLDQNFSSRPCLPRGVIRGCPDCSNCQKVVARWRPEDARRPNLEDAPVFRPTEEEFQDTLKYISSIRASAEPYGICRIVPPSSWKPPCPLKEKSVWEGSKFATRVQRIDKLQNRESVRKISRIQSNMKRKRRRCTRMGMDNGTGRGPNMGFCEAERFGFEPGPEFTLETFQRYADDFKAKYFRQNDNISHLGANTTILNGTLEPSVENIEGEYWRMVENPTEEIEVLYGADLETGDFGSGFPSKSSHVSSASHEHYRKAGWNLNNFARLPGSVLSYESSDISGVLVPWLYVGMCFSSFCWHVEDHHLYSLNYMHWGAPKMWYGVPGKDACKLEEAMRKHLPELFEEQPDLLHKLVTQLSPSILKSKGVPVYRCVQNAGEFVLTFPRAYHSGFNCGFNCAEAVNVAPVDWLPHGHIAIELYREQGRKTSISHDKLLLGAAREAVRAQWELNLLKKNTSDNLRWKDVCGKDSLLAKALKMRVEMERARREFLCSSLQALKMESGFDATSERECNICFFDLHLSAAGCHCSPDTYACLDHAKHFCSCPWDSKFFLFRYDISELNILVEALEGKLSAVYRWAKFDLGLALTSYVSVDKETILKELRTHSSNLSHSSGATLHPSNKFIEDSQLIDVPIENQANPAHSEDQSYLQQRKSAEAVSPLSHMKELLTINCSKPTCEAANLNICVNKEGSVICRTKLRTPGSQLSQEDSSYALSLPLAQNGGEKSSLYRHNSIILLSDDEDDKMKMPDSNRRKDSSQMLQGSRDKASPCNNIENTHLTIPVTDAAVMGEKDVIALPRKDKSPDSTQLLHVKQECHENRGPVLASTPVDLSFHIGLTSAESVGNIPASSIVEAGGHRLESSGVCPVDPQPSGTIKVKNEDNDEKFGGCATSNVADNVRAINGNFSCNLNNNRQKGPRIAKVVRRINCNVEPLEFGVVLSGKLWCSSQAIFPKGFRSRVRYISVLDPSSMCYYISEILDAGRDRPLFMVSLENCPSEVFIHLLATRCWELVRERVNQEITKQHKLGRKGLPPLQPPGSLDGFEMFGFSSPAIVQAIEALDRCRVCNGYWDSRPYSRPQGQFSQAYQTDVNGGNGQGVLMNQHMPVGVVAILRNLFKKVNAEELNSLYSILSDNMPAADRVLIAQLLNEEIHKSQPP 1259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4176g00064 1259 MobiDBLite consensus disorder prediction 858 877 - -
Gabi4176g00064 1259 MobiDBLite consensus disorder prediction 48 71 - -
Gabi4176g00064 1259 SMART fyrn_3 1039 1083 IPR003888 GO:0005634
Gabi4176g00064 1259 ProSiteProfiles FYR domain FYRC motif profile. 1085 1175 IPR003889 GO:0005634
Gabi4176g00064 1259 SMART fyrc_3 1089 1183 IPR003889 GO:0005634
Gabi4176g00064 1259 MobiDBLite consensus disorder prediction 844 877 - -
Gabi4176g00064 1259 FunFam Putative lysine-specific demethylase JMJ16 1031 1169 - -
Gabi4176g00064 1259 SUPERFAMILY Clavaminate synthase-like 331 553 - -
Gabi4176g00064 1259 PANTHER LYSINE-SPECIFIC DEMETHYLASE 144 1129 - -
Gabi4176g00064 1259 SMART JmjN_1 150 191 IPR003349 -
Gabi4176g00064 1259 MobiDBLite consensus disorder prediction 39 73 - -
Gabi4176g00064 1259 Pfam F/Y rich C-terminus 1087 1171 IPR003889 GO:0005634
Gabi4176g00064 1259 ProSiteProfiles JmjC domain profile. 363 526 IPR003347 -
Gabi4176g00064 1259 Pfam jmjN domain 152 185 IPR003349 -
Gabi4176g00064 1259 Coils Coil 573 593 - -
Gabi4176g00064 1259 SMART cupin_9 363 526 IPR003347 -
Gabi4176g00064 1259 Pfam JmjC domain, hydroxylase 393 509 IPR003347 -
Gabi4176g00064 1259 ProSiteProfiles FYR domain FYRN motif profile. 1025 1083 IPR003888 GO:0005634
Gabi4176g00064 1259 Gene3D - 1032 1169 - -
Gabi4176g00064 1259 Pfam C5HC2 zinc finger 616 666 IPR004198 -
Gabi4176g00064 1259 ProSiteProfiles JmjN domain profile. 151 192 IPR003349 -
Gabi4176g00064 1259 Pfam F/Y-rich N-terminus 1038 1080 IPR003888 GO:0005634
Gabi4176g00064 1259 Gene3D Cupin 136 510 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4176g00064 Gabi-Chr4176 627608 638108 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4176g00064 5 1254 JUMONJI Transcription Factor Family AT1G08620 55.027 0.0 1264
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Gabi4176g00064 JmjC 3.8e-46 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4176g00064 K11446 - gmx:100800271 2141.7