Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4176g00051 ATGGCATCAATGAACTGGTTGGGTTTCTCTCTCTCCCCTCAAGAACTTCCATCACATTCTGCTATTGAAAACCAATCTCAAACAGTGGGATTCAACTCTGAAGGAATCTCCACCGAATGCTTTGATCATCTCACCTCCGAGTCCACTCATCACTCACTCAACCTCCCTCCTTCTTTTGGCTTATTTGAAGAACTCAACCAAAACCATTGTACTCATACTCCTCTAGATTGGAACACAAAGGGTTTGGAAAGCAACTCAGAGGATAACTACAACAGCCAAAACATGCTATTGGGAACATCATGCAGCCAAAGCAACCAAAACCTCGACAAAAACCAACAACAACCAAAACTCGAAAACTTTCTCGGCCCTCACTCTTTTGGAGATTTTATGTTCCAAAACTGTTCATTAAAACTTCCGACTCAGCCGTCGGAAAAGCCACCAACAGCCGGTGTTGGAGGTGGCAGTCCAAAAAACAGTAACTCTATTGGGTTGTCAATGATAAAGACAATGCAGAGGAACCAACCGTCACAATCAGAAGCTGCAAATACATCGCTTTCCATGAGCACGCAACAACCTAGGACGACAGTACTTGATAGCAAAGCAGGAATTAATACTGTTGAGACTGTGCCTAGAAAGTCCATTGATACATTTGGACAGAGGACTTCCATATACCGTGGTGTAACCAGGCATAGGTGGACTGGTAGATATGAGGCTCATCTATGGGACAATAGTTGTAGAAGAGAGGGACAAACTCGCAAAGGAAGACAAGTTTACTTGGGAGGTTATGACAAAGAAGAAAAGGCAGCCAGAGCTTACGATTTAGCAGCGCTGAAGTACTGGGGAACTACAACAACAACAAATTTTCCGATTAGCCAATATGAAAAAGAATTGGAAGAAATGAAGAACATGACAAGGCAAGAGTACGTCGCGTCATTGAGAAGGAAAAGCAGTGGTTTTTCTCGCGGTGCATCCATTTATAGAGGAGTAACGAGGCATCACCAAAATGGCAGATGGCAAGCTAGGATTGGAAGAGTTGCAGGCAACAAAGATCTCTACTTGGGAACTTTCAGCACCCAAGAAGAGGCTGCAGAGGCATATGATGTTGCAGCCATCAAATTTCGAGGACTGAAAGCCGTTACAAACTTCGACATGAACAGATACGACGTTAGGAGTATACTTGAGAGCAGTACTTTACCAATTGGTGGTGCTGCCAAACGTTTAAAGGATGTTGAAAAGGTTGATATGAACGTGAATGAGCAAAGGTCAAACATGGATTCCACTATGAGCTATGGAGCTCTTCCATTCCAGCAACCTCATCCTTATAGCCAGCTTCATTACACCTATGGAATTCAGAAGCTTTGGTGCAAACAAGAACAAGATTCTGATGTTTCTCAATCCTTACAAGATATTCATCAACTACAATATTTAGGAAATACCCACAATTTCTTTCAGTCCAGTTCAGGGTTGCAGTACCCTGTCATGAGCATTGATTCTGCTTCTTCTATTGATGTTAATAGCTCTGGATCTAACTCTGTCATTAATGGTTGTGGGGCCTACTTGATTCCCATGGCTACTACTACTACTACTACTAATACTTTCATTGCAGATGAAGGTAACCAAAATCAAAGAATCAGCAACGGTTTTGGTGATAGTGATGTAAACACGCTTGGTTATGAAAATGTATTAAGCTATAGTGATCCTTATCATGCAAAGAACTTGTATTATCTTTCGCAGCAAACATCTGCAGGTGCAGTTAAGGGTAGTGCATACGATGCATTCAATAACTGGGTGCCAACTGCGATTCCAACTATTGCACCAAGGCCTAACGATTTGGCTCTCTGTCCTGGAGCTCCACCGTTCACATGA 1866 0.4255 MASMNWLGFSLSPQELPSHSAIENQSQTVGFNSEGISTECFDHLTSESTHHSLNLPPSFGLFEELNQNHCTHTPLDWNTKGLESNSEDNYNSQNMLLGTSCSQSNQNLDKNQQQPKLENFLGPHSFGDFMFQNCSLKLPTQPSEKPPTAGVGGGSPKNSNSIGLSMIKTMQRNQPSQSEAANTSLSMSTQQPRTTVLDSKAGINTVETVPRKSIDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQTRKGRQVYLGGYDKEEKAARAYDLAALKYWGTTTTTNFPISQYEKELEEMKNMTRQEYVASLRRKSSGFSRGASIYRGVTRHHQNGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDVAAIKFRGLKAVTNFDMNRYDVRSILESSTLPIGGAAKRLKDVEKVDMNVNEQRSNMDSTMSYGALPFQQPHPYSQLHYTYGIQKLWCKQEQDSDVSQSLQDIHQLQYLGNTHNFFQSSSGLQYPVMSIDSASSIDVNSSGSNSVINGCGAYLIPMATTTTTTNTFIADEGNQNQRISNGFGDSDVNTLGYENVLSYSDPYHAKNLYYLSQQTSAGAVKGSAYDAFNNWVPTAIPTIAPRPNDLALCPGAPPFT 621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4176g00051 621 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 110 461 - -
Gabi4176g00051 621 Pfam AP2 domain 325 375 IPR001471 GO:0003700|GO:0006355
Gabi4176g00051 621 Pfam AP2 domain 223 281 IPR001471 GO:0003700|GO:0006355
Gabi4176g00051 621 ProSiteProfiles AP2/ERF domain profile. 223 289 IPR001471 GO:0003700|GO:0006355
Gabi4176g00051 621 CDD AP2 222 291 IPR001471 GO:0003700|GO:0006355
Gabi4176g00051 621 PRINTS Ethylene responsive element binding protein signature 224 235 IPR001471 GO:0003700|GO:0006355
Gabi4176g00051 621 PRINTS Ethylene responsive element binding protein signature 365 385 IPR001471 GO:0003700|GO:0006355
Gabi4176g00051 621 Gene3D AP2/ERF domain 223 291 IPR036955 GO:0003700|GO:0006355
Gabi4176g00051 621 Gene3D AP2/ERF domain 325 385 IPR036955 GO:0003700|GO:0006355
Gabi4176g00051 621 MobiDBLite consensus disorder prediction 153 194 - -
Gabi4176g00051 621 FunFam AP2-like ethylene-responsive transcription factor 324 385 - -
Gabi4176g00051 621 ProSiteProfiles AP2/ERF domain profile. 325 383 IPR001471 GO:0003700|GO:0006355
Gabi4176g00051 621 SMART rav1_2 223 295 IPR001471 GO:0003700|GO:0006355
Gabi4176g00051 621 SMART rav1_2 325 389 IPR001471 GO:0003700|GO:0006355
Gabi4176g00051 621 MobiDBLite consensus disorder prediction 139 194 - -
Gabi4176g00051 621 SUPERFAMILY DNA-binding domain 222 291 IPR016177 GO:0003677
Gabi4176g00051 621 CDD AP2 324 383 IPR001471 GO:0003700|GO:0006355
Gabi4176g00051 621 SUPERFAMILY DNA-binding domain 324 384 IPR016177 GO:0003677
Gabi4176g00051 621 FunFam AP2-like ethylene-responsive transcription factor ANT 222 291 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4176g00051 Gabi-Chr4176 533677 538756 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4176g00051 115 424 AP2-EREBP Transcription Factor Family AT5G17430 64.350 1.43e-137 410
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Gabi4176g00051 AP2 1.4e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4176g00051 K09285 - qsu:111984882 751.51