Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4176g00049 ATGATGGGTAATCACAATATACTACTGGGCACTGCTATATCACTGTGCATGGTTTTGGGTCCTTGGATCTTCATTGAAGCTGCCCCTCCTGCCTCTCTTATCACAAAACTCCCTGGCTTTCAAGGAACTTTCCCGTCCAAGCACTACTCCGGATATGTAAGCGTTGATGGAAATAGTGAGAGTGGGAAAAACTTGTTCTACTACTTTGTAAGTTCCGAAAGAAATCCACGGAAGGATCCAGTTGTTCTATGGTTGAATGGAGGACCAGGGTGCTCCAGCTTTGATGGCTTCGTTTATGAGCATGGGCCATTCAACTTTGAGGCAGCTAAAACGGTAGGGGATCTTCCCACTTTGCATATCAATCCCTACAGCTGGTCTAAGGTTTCCAACATTATTTATTTGGATTCTCCCGCGGGTGTTGGCCTCTCTTACTCCAAGAACTCAAGCAAATACAGTACTGGGGACCTACAAACTGCGTATGATACCCATGCTTTCCTCTTAAAGTGGTTTAAGCAATTCCCTGAATTCCTTGATAATCCATTTTATATTTCCGGGGAATCTTATGCTGGAATATATGTGCCCACTCTAGCTTATGAAGTAGTTAAAGGAATCCGGGGTGGTACTAAGCCCGTGATCAATTTTAAGGGTTACATAGTTGGAAATGGTGTCACGGACCAAACATTTGACGGCAATGCTCTTATCCCATTTGTGCATGGGATGGGCCTCATATCCGACAATATCTATGAGGATGTAGAAGCTTCTTGCAAGGGAAAGTACTACAATCCTGAGTCCGAAGACTATAATAATAATCTGTGCTCTTCAAACCTCCAAAAGGTTTACAGGGCAATTGATGGGCTAAACGTGTACGATATACTAGAGCCATGCTACCATTACCCTACTGATCATGCCAAAGGAAACAAAAGCTTGCCATTGAGTTTCCAGCAATTAGGAACTACCGATAAGCCTCTCCCTGTGAGAAAGAGGATGTTTGGTCGAGCTTGGCCCTTTCTAGCACCAGTCAAAGATGGCCTCGTTCCATTATGGCCCCAACTGGCTCAAAATAAGCATATCGCTTGTACTAGTGATGAAGTAGCAAGTTCATGGCTTAACAACGAAGAAGTCAGAAAAGCCATTCATGCTGAGCAAGAAAGTGTGGCGGGTCAGTGGGAATTATGCACTGGAAGGATACATTACCGTCACGATGCTGGAAGCATGATTCCTTACCACAAGAAGCTAACCATGTTGGGCTATCGAGCACTTATTTTCAGTGGCGACCATGATATGTGCGTGCCATATACCGGAAGTGAGGCATGGACTCGATCTCTGGGATATACGATTGTGGATGAATGGAGGCCATGGAGCTCTAATGACCAAGTTGCTGGGTATTTGCAAGCATATGATAACGAACTCATCTTCCTCACTGTCAAGGGAGCTGGTCACACTGTCCCTGAATATAAGCCACAGGAGGCACTGTATTTTTACAGCCGATGGTTGGAAGGAAAACCAATATAG 1512 0.4471 MMGNHNILLGTAISLCMVLGPWIFIEAAPPASLITKLPGFQGTFPSKHYSGYVSVDGNSESGKNLFYYFVSSERNPRKDPVVLWLNGGPGCSSFDGFVYEHGPFNFEAAKTVGDLPTLHINPYSWSKVSNIIYLDSPAGVGLSYSKNSSKYSTGDLQTAYDTHAFLLKWFKQFPEFLDNPFYISGESYAGIYVPTLAYEVVKGIRGGTKPVINFKGYIVGNGVTDQTFDGNALIPFVHGMGLISDNIYEDVEASCKGKYYNPESEDYNNNLCSSNLQKVYRAIDGLNVYDILEPCYHYPTDHAKGNKSLPLSFQQLGTTDKPLPVRKRMFGRAWPFLAPVKDGLVPLWPQLAQNKHIACTSDEVASSWLNNEEVRKAIHAEQESVAGQWELCTGRIHYRHDAGSMIPYHKKLTMLGYRALIFSGDHDMCVPYTGSEAWTRSLGYTIVDEWRPWSSNDQVAGYLQAYDNELIFLTVKGAGHTVPEYKPQEALYFYSRWLEGKPI 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4176g00049 503 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 34 487 IPR001563 GO:0004185|GO:0006508
Gabi4176g00049 503 ProSitePatterns Serine carboxypeptidases, histidine active site. 470 487 IPR033124 GO:0004185
Gabi4176g00049 503 Gene3D - 359 397 - -
Gabi4176g00049 503 Gene3D alpha/beta hydrolase 27 329 IPR029058 -
Gabi4176g00049 503 ProSitePatterns Serine carboxypeptidases, serine active site. 183 190 IPR018202 GO:0004185
Gabi4176g00049 503 FunFam Carboxypeptidase 405 500 - -
Gabi4176g00049 503 Pfam Serine carboxypeptidase 38 500 IPR001563 GO:0004185|GO:0006508
Gabi4176g00049 503 Gene3D - 405 500 - -
Gabi4176g00049 503 SUPERFAMILY alpha/beta-Hydrolases 34 502 IPR029058 -
Gabi4176g00049 503 PRINTS Carboxypeptidase C serine protease (S10) family signature 169 194 IPR001563 GO:0004185|GO:0006508
Gabi4176g00049 503 PRINTS Carboxypeptidase C serine protease (S10) family signature 121 133 IPR001563 GO:0004185|GO:0006508
Gabi4176g00049 503 PRINTS Carboxypeptidase C serine protease (S10) family signature 470 483 IPR001563 GO:0004185|GO:0006508
Gabi4176g00049 503 PRINTS Carboxypeptidase C serine protease (S10) family signature 134 144 IPR001563 GO:0004185|GO:0006508
Gabi4176g00049 503 FunFam Carboxypeptidase 27 316 - -
Gabi4176g00049 503 FunFam Carboxypeptidase 358 502 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4176g00049 Gabi-Chr4176 487731 493082 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4176g00049 364 503 Calmodulin-binding Proteins AT2G22960 48.571 2.38e-44 152
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4176g00049 K16296 - gmx:100790895 830.476