Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4176g00048 ATGGAAAGGCTTGTAATTCTTCCTTTTTCTTTTGGATGCATCTCTGAGGCTAGCGTGGATGTTGGTTTTCCTCATCCAAGAAGATCAAGATCATACACCATCTCACCAGCTGCTGCAATAAGAGTTGGAAGAACTGGAAATGGAGATGGAAATCAGGTTCCAACAAATGTGAAACACGTGACACTCATTGGTTGGGATGGTATTGGTATGGCAGGAACAGAATCTGCAAAGTCTTCTGACCCCAAAAGGCACTACAATGACGGTTTGGTGACGATGGTGGTAGTGGAGGTGGAGGAAGAGGAAGACAACACCAACGCCGTTCTGGTTGCGCCGTGCAACTTTTCAATGGTCGAGGAGGGCATTTATCGCTCCAGCTTCCCTCAACCTTCCAATTTCGCCTTTCTCAAAACCCTAAATCTTCGATCCATAATATACTTGTGCACCGAACCATATCCACAGCAAAACTTAGAGTTCCTTCGATCGCACGAAATTCGACTCTTTCACTTTGGTATTGAGGGCAAGACGGATCTATCTGTATCTACTGTGAAGGATACTATCATGGATGCTCTCAAAGTTCTAATTGATGAGAAAAATCATCCAGTTTTGATCCACTGCAATCGAGGAAAGCATCGAACTGGTTGCGTTGTTGGTTGCTTGAGAAAATTGCGGAAATGGTGTTTATCTTCTGTGTATGAGGAATACCAGCGATTTGCTGGTGCTAAATCCAGGATAACAGATTTAAGGTTTCTGGAAGAATTTGACGTCTTAAGTCTGAGGCAGTGCCTTTACAGCATCATCTACCAGTACCAAGGTTATGCTTCAAAGAAGCCGCGGTTGTTGTATTCAGATGAGAATTTACACAAGCCCCAATTGGCACCGGTTTAG 885 0.4395 MERLVILPFSFGCISEASVDVGFPHPRRSRSYTISPAAAIRVGRTGNGDGNQVPTNVKHVTLIGWDGIGMAGTESAKSSDPKRHYNDGLVTMVVVEVEEEEDNTNAVLVAPCNFSMVEEGIYRSSFPQPSNFAFLKTLNLRSIIYLCTEPYPQQNLEFLRSHEIRLFHFGIEGKTDLSVSTVKDTIMDALKVLIDEKNHPVLIHCNRGKHRTGCVVGCLRKLRKWCLSSVYEEYQRFAGAKSRITDLRFLEEFDVLSLRQCLYSIIYQYQGYASKKPRLLYSDENLHKPQLAPV 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4176g00048 294 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 184 216 IPR000387 GO:0016311|GO:0016791
Gabi4176g00048 294 CDD PFA-DSP_Siw14 108 254 - -
Gabi4176g00048 294 ProSitePatterns Tyrosine specific protein phosphatases active site. 203 213 IPR016130 GO:0016311|GO:0016791
Gabi4176g00048 294 Pfam Tyrosine phosphatase family 108 255 IPR004861 -
Gabi4176g00048 294 Gene3D Protein tyrosine phosphatase superfamily 107 257 IPR029021 -
Gabi4176g00048 294 PANTHER TYROSINE-PROTEIN PHOSPHATASE 102 266 - -
Gabi4176g00048 294 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 109 254 IPR029021 -
Gabi4176g00048 294 PRINTS Plant and fungal dual specificity phosphatase signature 145 158 IPR020428 GO:0016791
Gabi4176g00048 294 PRINTS Plant and fungal dual specificity phosphatase signature 108 125 IPR020428 GO:0016791
Gabi4176g00048 294 PRINTS Plant and fungal dual specificity phosphatase signature 164 178 IPR020428 GO:0016791
Gabi4176g00048 294 PRINTS Plant and fungal dual specificity phosphatase signature 181 195 IPR020428 GO:0016791
Gabi4176g00048 294 ProSiteProfiles Dual specificity protein phosphatase domain profile. 113 264 IPR020422 GO:0006470|GO:0008138
Gabi4176g00048 294 FunFam probable tyrosine-protein phosphatase At1g05000 107 257 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4176g00048 Gabi-Chr4176 456412 466787 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4176g00048 97 294 Protein tyrosine phosphatase (PTP) family AT3G02800 64.000 1.47e-93 273
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4176g00048 K18045 - zju:107412514 310.457