Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4176g00046 ATGGTCATGGATTTCCACGCCGCAATTCCCATGTCCCAAGCGGCCCTCACTCAAGATGCACTGTGGCTATTGAGGTCAACTGAAACAATGGAATCTGGAACTTATCCGGAGCGTCCAGGGGAGCCAGATTGTTCATATTACATCAGAACAGGCCTTTGTAGATTTGGTGCAACATGTCGATTTAACCATCCTCCTAACAGGAAGCTGGCTATTGCCGCTGCAAGGATGATGGGCGAGTTCCCGGAAAGAATAGGGCAACCAGAATGTCAGTACTATCTGAAGACAGGAGCTTGCAAATTTGGAGCCACATGCAAGTTTCATCATCCTAGAGACCAGGCTGGGATTGCTGGAAGAGTTTCCTTAAATATTTTAGGCTATCCGCTCCGCCCTAATGAGCCTGAGTGCACTTATTATTTGAGAACAGGACAATGCAAATTTGGGAACACTTGCAAATTCCACCATCCTCAACCAAGTAATATGATGCTTTCATTACGGGGTTCTCCTGTTTATCCTACTGTCCATTCTCCAAATACACCAGGTCAGCAGTCATATGCAGGAGGAATTACAAATTGGTCAAGGGCATCTTATATTCCTAGTCCGCGCTGGCAAGGTCCTTCAGGTTATACACCTTTAGTTCTCCCTCAGGGAGTGGTTTCAGTGCCTGGGTGGAGTGCATACAGTGGTCAAATGGGATCAATCTCTAATCCAGACAGTCCACATCAAACAATGGGAAATGGTCAAACTTATGGAACTTCTCGCCAAGTTGAACTAGCAAATGCAGGATCACATGGGGCATATTCTCAATTCCGTTCTGGCACCATTCCTGTAGGGTTTTATGCATTGCAGAGGGAGAACGTATTTCCTGAGAGACCTGGTCAGCCTGAATGCCAATTTTACATGAAAACAGGAGATTGTAAGTTTGGAGCAGTCTGTCGGTTCCACCACCCGCGTGAGAGGCTAATTCCTGCTCCTGACTGTGTCTTGAGTCCTATAGGCCTCCCTTTACGTCCTGGAGAGCCTTTATGTGTCTTCTATTCACGCTATGGCATATGCAAATTTGGCCCAAGTTGCAAGTTTGACCACCCAATGGGAATTTTCACCTATAATATATCTGCATCGCCTTCAGCTGATGTCCCAGGCCAGCGTCTGTTCGGATCTTCATCGGGAACTGCTGCATTAAATTTATCATCAGAAGAACTTGTTGAGTCAAGCTCAGCAAAACCAAGGAGGCTTTCATTGTCAGAGACAAGACAGATTCCTTCTGGTGATGATGACATTGATGATGATGATGATGATGAATGA 1302 0.4593 MVMDFHAAIPMSQAALTQDALWLLRSTETMESGTYPERPGEPDCSYYIRTGLCRFGATCRFNHPPNRKLAIAAARMMGEFPERIGQPECQYYLKTGACKFGATCKFHHPRDQAGIAGRVSLNILGYPLRPNEPECTYYLRTGQCKFGNTCKFHHPQPSNMMLSLRGSPVYPTVHSPNTPGQQSYAGGITNWSRASYIPSPRWQGPSGYTPLVLPQGVVSVPGWSAYSGQMGSISNPDSPHQTMGNGQTYGTSRQVELANAGSHGAYSQFRSGTIPVGFYALQRENVFPERPGQPECQFYMKTGDCKFGAVCRFHHPRERLIPAPDCVLSPIGLPLRPGEPLCVFYSRYGICKFGPSCKFDHPMGIFTYNISASPSADVPGQRLFGSSSGTAALNLSSEELVESSSAKPRRLSLSETRQIPSGDDDIDDDDDDE 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4176g00046 433 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 292 317 IPR000571 GO:0046872
Gabi4176g00046 433 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 132 156 IPR000571 GO:0046872
Gabi4176g00046 433 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 338 363 IPR000571 GO:0046872
Gabi4176g00046 433 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 40 65 IPR000571 GO:0046872
Gabi4176g00046 433 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 86 110 IPR000571 GO:0046872
Gabi4176g00046 433 FunFam CCCH type zinc finger protein 288 373 - -
Gabi4176g00046 433 ProSiteProfiles Zinc finger C3H1-type profile. 290 318 IPR000571 GO:0046872
Gabi4176g00046 433 Gene3D - 36 115 - -
Gabi4176g00046 433 Gene3D - 289 369 - -
Gabi4176g00046 433 ProSiteProfiles Zinc finger C3H1-type profile. 336 364 IPR000571 GO:0046872
Gabi4176g00046 433 ProSiteProfiles Zinc finger C3H1-type profile. 83 111 IPR000571 GO:0046872
Gabi4176g00046 433 MobiDBLite consensus disorder prediction 397 419 - -
Gabi4176g00046 433 ProSiteProfiles Zinc finger C3H1-type profile. 129 157 IPR000571 GO:0046872
Gabi4176g00046 433 SMART c3hfinal6 129 156 IPR000571 GO:0046872
Gabi4176g00046 433 SMART c3hfinal6 336 363 IPR000571 GO:0046872
Gabi4176g00046 433 SMART c3hfinal6 83 110 IPR000571 GO:0046872
Gabi4176g00046 433 SMART c3hfinal6 290 317 IPR000571 GO:0046872
Gabi4176g00046 433 SMART c3hfinal6 38 65 IPR000571 GO:0046872
Gabi4176g00046 433 SUPERFAMILY CCCH zinc finger 294 320 IPR036855 GO:0046872
Gabi4176g00046 433 FunFam Zinc finger nuclease 2 37 114 - -
Gabi4176g00046 433 PANTHER PROTEIN PHOSPHATASE RELATED 27 384 - -
Gabi4176g00046 433 MobiDBLite consensus disorder prediction 397 433 - -
Gabi4176g00046 433 SUPERFAMILY CCCH zinc finger 43 66 IPR036855 GO:0046872
Gabi4176g00046 433 ProSiteProfiles Zinc finger C3H1-type profile. 38 66 IPR000571 GO:0046872
Gabi4176g00046 433 SUPERFAMILY CCCH zinc finger 132 157 IPR036855 GO:0046872
Gabi4176g00046 433 SUPERFAMILY CCCH zinc finger 339 363 IPR036855 GO:0046872
Gabi4176g00046 433 SUPERFAMILY CCCH zinc finger 87 112 IPR036855 GO:0046872
Gabi4176g00046 433 Gene3D - 116 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4176g00046 Gabi-Chr4176 434762 441426 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4176g00046 24 432 C2H2 Transcription Factor Family AT3G02830 60.964 1.39e-175 494
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Gabi4176g00046 zf-CCCH 5.3e-09 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4176g00046 - - gmx:100786261 775.393