Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Gabi4176g00046 | ATGGTCATGGATTTCCACGCCGCAATTCCCATGTCCCAAGCGGCCCTCACTCAAGATGCACTGTGGCTATTGAGGTCAACTGAAACAATGGAATCTGGAACTTATCCGGAGCGTCCAGGGGAGCCAGATTGTTCATATTACATCAGAACAGGCCTTTGTAGATTTGGTGCAACATGTCGATTTAACCATCCTCCTAACAGGAAGCTGGCTATTGCCGCTGCAAGGATGATGGGCGAGTTCCCGGAAAGAATAGGGCAACCAGAATGTCAGTACTATCTGAAGACAGGAGCTTGCAAATTTGGAGCCACATGCAAGTTTCATCATCCTAGAGACCAGGCTGGGATTGCTGGAAGAGTTTCCTTAAATATTTTAGGCTATCCGCTCCGCCCTAATGAGCCTGAGTGCACTTATTATTTGAGAACAGGACAATGCAAATTTGGGAACACTTGCAAATTCCACCATCCTCAACCAAGTAATATGATGCTTTCATTACGGGGTTCTCCTGTTTATCCTACTGTCCATTCTCCAAATACACCAGGTCAGCAGTCATATGCAGGAGGAATTACAAATTGGTCAAGGGCATCTTATATTCCTAGTCCGCGCTGGCAAGGTCCTTCAGGTTATACACCTTTAGTTCTCCCTCAGGGAGTGGTTTCAGTGCCTGGGTGGAGTGCATACAGTGGTCAAATGGGATCAATCTCTAATCCAGACAGTCCACATCAAACAATGGGAAATGGTCAAACTTATGGAACTTCTCGCCAAGTTGAACTAGCAAATGCAGGATCACATGGGGCATATTCTCAATTCCGTTCTGGCACCATTCCTGTAGGGTTTTATGCATTGCAGAGGGAGAACGTATTTCCTGAGAGACCTGGTCAGCCTGAATGCCAATTTTACATGAAAACAGGAGATTGTAAGTTTGGAGCAGTCTGTCGGTTCCACCACCCGCGTGAGAGGCTAATTCCTGCTCCTGACTGTGTCTTGAGTCCTATAGGCCTCCCTTTACGTCCTGGAGAGCCTTTATGTGTCTTCTATTCACGCTATGGCATATGCAAATTTGGCCCAAGTTGCAAGTTTGACCACCCAATGGGAATTTTCACCTATAATATATCTGCATCGCCTTCAGCTGATGTCCCAGGCCAGCGTCTGTTCGGATCTTCATCGGGAACTGCTGCATTAAATTTATCATCAGAAGAACTTGTTGAGTCAAGCTCAGCAAAACCAAGGAGGCTTTCATTGTCAGAGACAAGACAGATTCCTTCTGGTGATGATGACATTGATGATGATGATGATGATGAATGA | 1302 | 0.4593 | MVMDFHAAIPMSQAALTQDALWLLRSTETMESGTYPERPGEPDCSYYIRTGLCRFGATCRFNHPPNRKLAIAAARMMGEFPERIGQPECQYYLKTGACKFGATCKFHHPRDQAGIAGRVSLNILGYPLRPNEPECTYYLRTGQCKFGNTCKFHHPQPSNMMLSLRGSPVYPTVHSPNTPGQQSYAGGITNWSRASYIPSPRWQGPSGYTPLVLPQGVVSVPGWSAYSGQMGSISNPDSPHQTMGNGQTYGTSRQVELANAGSHGAYSQFRSGTIPVGFYALQRENVFPERPGQPECQFYMKTGDCKFGAVCRFHHPRERLIPAPDCVLSPIGLPLRPGEPLCVFYSRYGICKFGPSCKFDHPMGIFTYNISASPSADVPGQRLFGSSSGTAALNLSSEELVESSSAKPRRLSLSETRQIPSGDDDIDDDDDDE | 433 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Gabi4176g00046 | 433 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 292 | 317 | IPR000571 | GO:0046872 | |
Gabi4176g00046 | 433 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 132 | 156 | IPR000571 | GO:0046872 | |
Gabi4176g00046 | 433 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 338 | 363 | IPR000571 | GO:0046872 | |
Gabi4176g00046 | 433 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 40 | 65 | IPR000571 | GO:0046872 | |
Gabi4176g00046 | 433 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 86 | 110 | IPR000571 | GO:0046872 | |
Gabi4176g00046 | 433 | FunFam | CCCH type zinc finger protein | 288 | 373 | - | - | |
Gabi4176g00046 | 433 | ProSiteProfiles | Zinc finger C3H1-type profile. | 290 | 318 | IPR000571 | GO:0046872 | |
Gabi4176g00046 | 433 | Gene3D | - | 36 | 115 | - | - | |
Gabi4176g00046 | 433 | Gene3D | - | 289 | 369 | - | - | |
Gabi4176g00046 | 433 | ProSiteProfiles | Zinc finger C3H1-type profile. | 336 | 364 | IPR000571 | GO:0046872 | |
Gabi4176g00046 | 433 | ProSiteProfiles | Zinc finger C3H1-type profile. | 83 | 111 | IPR000571 | GO:0046872 | |
Gabi4176g00046 | 433 | MobiDBLite | consensus disorder prediction | 397 | 419 | - | - | |
Gabi4176g00046 | 433 | ProSiteProfiles | Zinc finger C3H1-type profile. | 129 | 157 | IPR000571 | GO:0046872 | |
Gabi4176g00046 | 433 | SMART | c3hfinal6 | 129 | 156 | IPR000571 | GO:0046872 | |
Gabi4176g00046 | 433 | SMART | c3hfinal6 | 336 | 363 | IPR000571 | GO:0046872 | |
Gabi4176g00046 | 433 | SMART | c3hfinal6 | 83 | 110 | IPR000571 | GO:0046872 | |
Gabi4176g00046 | 433 | SMART | c3hfinal6 | 290 | 317 | IPR000571 | GO:0046872 | |
Gabi4176g00046 | 433 | SMART | c3hfinal6 | 38 | 65 | IPR000571 | GO:0046872 | |
Gabi4176g00046 | 433 | SUPERFAMILY | CCCH zinc finger | 294 | 320 | IPR036855 | GO:0046872 | |
Gabi4176g00046 | 433 | FunFam | Zinc finger nuclease 2 | 37 | 114 | - | - | |
Gabi4176g00046 | 433 | PANTHER | PROTEIN PHOSPHATASE RELATED | 27 | 384 | - | - | |
Gabi4176g00046 | 433 | MobiDBLite | consensus disorder prediction | 397 | 433 | - | - | |
Gabi4176g00046 | 433 | SUPERFAMILY | CCCH zinc finger | 43 | 66 | IPR036855 | GO:0046872 | |
Gabi4176g00046 | 433 | ProSiteProfiles | Zinc finger C3H1-type profile. | 38 | 66 | IPR000571 | GO:0046872 | |
Gabi4176g00046 | 433 | SUPERFAMILY | CCCH zinc finger | 132 | 157 | IPR036855 | GO:0046872 | |
Gabi4176g00046 | 433 | SUPERFAMILY | CCCH zinc finger | 339 | 363 | IPR036855 | GO:0046872 | |
Gabi4176g00046 | 433 | SUPERFAMILY | CCCH zinc finger | 87 | 112 | IPR036855 | GO:0046872 | |
Gabi4176g00046 | 433 | Gene3D | - | 116 | 164 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Gabi4176g00046 | Gabi-Chr4176 | 434762 | 441426 | Dispersed/Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Gabi4176g00046 | 24 | 432 | C2H2 Transcription Factor Family | AT3G02830 | 60.964 | 1.39e-175 | 494 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C3H | Gabi4176g00046 | zf-CCCH | 5.3e-09 | CL0537 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Gabi4176g00046 | - | - | gmx:100786261 | 775.393 |