Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4176g00045 ATGGTCATGGATTTCCACGCCGCAATTCCCATGTCCCAAGCGGCCCTCACTCAAGATGCACTGTGGCTATTGAGGTCAACTGAAACAATGGAATCTGGAACTTATCCGGAGCGTCCAGGGGAGCCAGATTGTTCATATTACATCAGAACAGGCCTTTGTAGATTTGGTGCAACATGTCGATTTAACCATCCTCCTAACAGGAAGCTGGCTATTGCCGCTGCAAGGATGATGGGCGAGTTCCCGGAAAGAATAGGGCAACCAGAATGTCAGTACTATCTGAAGACAGGAGCTTGCAAATTTGGAGCCACATGCAAGTTTCATCATCCTAGAGACCAGGCTGGGATTGCTGGAAGAGTTTCCTTAAATATTTTAGGCTATCCGCTCCGCCCTAATGAGCCTGAGTGCACTTATTATTTGAGAACAGGACAATGCAAATTTGGGAACACTTGCAAATTCCACCATCCTCAACCAAGTAATATGATGCTTTCATTACGGGGTCAGCAGTCATATGCAGGAGGAATTACAAATTGGTCAAGGGCATCTTATATTCCTAGTCCGCGCTGGCAAGGTCCTTCAGGTTATACACCTTTAGTTCTCCCTCAGGGAGTGGTTTCAGTGCCTGGGTGGAGTGCATACAGTGGTCAAATGGGATCAATCTCTAATCCAGACAGTCCACATCAAACAATGGGAAATGGTCAAACTTATGGAACTTCTCGCCAAGTTGAACTAGCAAATGCAGGATCACATGGGGCATATTCTCAATTCCGTTCTGGCACCATTCCTGTAGGGTTTTATGCATTGCAGAGGGAGAACGTATTTCCTGAGAGACCTGGTCAGCCTGAATGCCAATTTTACATGAAAACAGGAGATTGTAAGTTTGGAGCAGTCTGTCGGTTCCACCACCCGCGTGAGAGGCTAATTCCTGCTCCTGACTGTGTCTTGAGTCCTATAGGCCTCCCTTTACGTCCTGGAGAGCCTTTATGTGTCTTCTATTCACGCTATGGCATATGCAAATTTGGCCCAAGTTGCAAGTTTGACCACCCAATGGGAATTTTCACCTATAATATATCTGCATCGCCTTCAGCTGATGTCCCAGGCCAGCGTCTGTTCGGATCTTCATCGGGAACTGCTGCATTAAATTTATCATCAGAAGAACTTGTTGAGTCAAGCTCAGCAAAACCAAGGAGGCTTTCATTGTCAGAGACAAGACAGATTCCTTCTGGTGATGATGACATTGATGATGATGATGATGATGAATGA 1260 0.4603 MVMDFHAAIPMSQAALTQDALWLLRSTETMESGTYPERPGEPDCSYYIRTGLCRFGATCRFNHPPNRKLAIAAARMMGEFPERIGQPECQYYLKTGACKFGATCKFHHPRDQAGIAGRVSLNILGYPLRPNEPECTYYLRTGQCKFGNTCKFHHPQPSNMMLSLRGQQSYAGGITNWSRASYIPSPRWQGPSGYTPLVLPQGVVSVPGWSAYSGQMGSISNPDSPHQTMGNGQTYGTSRQVELANAGSHGAYSQFRSGTIPVGFYALQRENVFPERPGQPECQFYMKTGDCKFGAVCRFHHPRERLIPAPDCVLSPIGLPLRPGEPLCVFYSRYGICKFGPSCKFDHPMGIFTYNISASPSADVPGQRLFGSSSGTAALNLSSEELVESSSAKPRRLSLSETRQIPSGDDDIDDDDDDE 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4176g00045 419 MobiDBLite consensus disorder prediction 383 419 - -
Gabi4176g00045 419 SUPERFAMILY CCCH zinc finger 87 112 IPR036855 GO:0046872
Gabi4176g00045 419 SMART c3hfinal6 129 156 IPR000571 GO:0046872
Gabi4176g00045 419 SMART c3hfinal6 83 110 IPR000571 GO:0046872
Gabi4176g00045 419 SMART c3hfinal6 276 303 IPR000571 GO:0046872
Gabi4176g00045 419 SMART c3hfinal6 38 65 IPR000571 GO:0046872
Gabi4176g00045 419 SMART c3hfinal6 322 349 IPR000571 GO:0046872
Gabi4176g00045 419 SUPERFAMILY CCCH zinc finger 280 306 IPR036855 GO:0046872
Gabi4176g00045 419 Gene3D - 36 113 - -
Gabi4176g00045 419 Gene3D - 275 355 - -
Gabi4176g00045 419 ProSiteProfiles Zinc finger C3H1-type profile. 83 111 IPR000571 GO:0046872
Gabi4176g00045 419 SUPERFAMILY CCCH zinc finger 325 349 IPR036855 GO:0046872
Gabi4176g00045 419 PANTHER PROTEIN PHOSPHATASE RELATED 27 370 - -
Gabi4176g00045 419 FunFam Zinc finger nuclease 2 37 114 - -
Gabi4176g00045 419 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 278 303 IPR000571 GO:0046872
Gabi4176g00045 419 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 324 349 IPR000571 GO:0046872
Gabi4176g00045 419 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 132 156 IPR000571 GO:0046872
Gabi4176g00045 419 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 40 65 IPR000571 GO:0046872
Gabi4176g00045 419 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 86 110 IPR000571 GO:0046872
Gabi4176g00045 419 ProSiteProfiles Zinc finger C3H1-type profile. 129 157 IPR000571 GO:0046872
Gabi4176g00045 419 ProSiteProfiles Zinc finger C3H1-type profile. 276 304 IPR000571 GO:0046872
Gabi4176g00045 419 ProSiteProfiles Zinc finger C3H1-type profile. 322 350 IPR000571 GO:0046872
Gabi4176g00045 419 ProSiteProfiles Zinc finger C3H1-type profile. 38 66 IPR000571 GO:0046872
Gabi4176g00045 419 FunFam CCCH type zinc finger protein 274 359 - -
Gabi4176g00045 419 SUPERFAMILY CCCH zinc finger 132 157 IPR036855 GO:0046872
Gabi4176g00045 419 MobiDBLite consensus disorder prediction 383 405 - -
Gabi4176g00045 419 Gene3D - 114 165 - -
Gabi4176g00045 419 SUPERFAMILY CCCH zinc finger 43 66 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4176g00045 Gabi-Chr4176 434761 441426 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4176g00045 24 418 C2H2 Transcription Factor Family AT3G02830 62.843 3.77e-179 502
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Gabi4176g00045 zf-CCCH 5e-09 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4176g00045 - - gmx:100786261 739.184