Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4176g00040 ATGTTTAAATTCCTGAAAGAGGTGGTGGGTGGATCTGGAACGGGCCTTAAGGATCTCCCATACAACATTGGCGAACCTTACCCTTCTGCTTGGGGTTCTTGGGTTCATTACCGCGGCACCTCCAAGGATGATGGGTCTGCTGTGTCAATCTTCTCTCTATCTGGGACCAATGCTCAGGACGGACATTTAGCTGCGGGTCGTAATGGTGTGAAGCGTCTACGCACTGTTAGGCATCCAAATATTTTGTCATTTCTTCACAGTACCGAGATCGAAACTCATGATGCTGGTTCTCCCAAGGTTACAATTTATATGGTAACCGAGCCTGTAATGCTACTGTCAGACAAGATTAAGGAGTTAGGTCTTGAAGGTACACAGAGGGATGAATATTATGCTTGGGGCCTGCATCAAATAGCGAAAGCTGTGAGCTTCTTAAATAATGATTGTAAACTTGTTCATGGTAATGTTTGCATGGCTAGTGTTGTTGTCACGCAAACTTTGGACTGGAAACTCCATGCTTTTGATGTTCTATCAGAGTTTGATGGGAGTAATGAAACTTCGTCTGGGCAAATGCTGCAATATGCATGGCTTGTTGGAGCACAATACAAACCAATGGAGCTTGTAAAATCTGACTGGGCTGTAATTAAGAAGTCTCCTCCATGGGCCATTGATTCTTGGGGCATGGGTTGTCTAATCTATGAGCTATTCTCTGGTATGAAGTTGGTGAAAACTGAGGAGTTACGCAACACTGTCTCCATTCCCAAGTCTTTGCTTCCAGATTACCAGCGGCTACTAAGTTCCACGCCTTCTCGTAGATTGAATACATCAAAGCTTATAGAAAACAGTGAGTATTTTCAAAATAAGCTGGTAGACACAATTCATTTCATGGAAATTCTCAGTTTGAAAGACAGTGTTGAGAAAGACACCTTCTTCCGCAAGCTTCCAAATTTAGCAGAGCAGCTTCCTCGTCAGATTGTGTTGAAGAAGTTACTTCCTTTATTAGCTTCTGCCCTTGAATTTGGTTCAGCTGCTGCCCCCGCCTTGACTGCATTGTTGAAAGTGGGTTCCTGGCTTTCAGCTGAGGAGTTTCGTGTCAAGGTTCTTCCAACAATTGTTAAACTCTTTGCCTCCAATGACCGAGCTATTCGAGTTGGCCTTCTTCAACATATTGATCAATATGGAGAGTCATTATCAGCACAAGTTGTTGACGAGCAGGTTTACCCTCATGTTGCTACTGGATTCTCTGATACATCTGCTTTTCTGAGGGAACTTACTCTCAAGTCCATGCTAATTCTGGCTCAGAAGCTGTCTCATAGGACCATTTCAGGGTCGTTATTAAAGCATCTGTCAAAGTTACAGGTTGATGAAGAACCAGCAATACGAACAAATACTACCATTTTATTGGGAAATATTGCAAGCTACTTAAACGAAGGGACAAGAAAAAGAGTGTTGATTAATGCATTTACGGTCCGTGCTTTACGTGATACTTTTCCACCTGCTAGAGGAGCAGGCATTATGGCTTTATGTGCCACCAGTTCATATTATGACATCACTGAAGTTGCTACTAGGATTCTTCCTAATGTTGTTGTACTCACAATTGATCCTGACAGTGATGTTCGTTCTAAGGCATTTCAAGCTGTTGATCAATTTTTGCAGTTGGCAAAGCAATATTATGAAAAGACAAATACAGCAGACGCTACTGGGGGTGCAGGCATGGGAATCTCATCAATTCCAGGAAATGCAAGTTTACTTGGATGGGCTATGAGCTCTTTGACCCTTAAGGGTAAACCTTCTGATCATGCTCCAGTTCCTTCTGTGAGTTCTAGTGCACTTACTCCAACATCTTCTAATGCCAGCTCAGCTATTGATACTCCATCAACAGCACCTATCCGTGTAAGCTCCGCACCAGATTTTGCTGAACATCCTGTCCCTACCTCCCCTACATCAACGGATGGCTGGGGGGAACTGGAGAATGGAATCGATGAGGAGCGTGAAAATGACAAGGATGGGTGGGATGATCTGGAACCACTTGAAGAAACAAAGCCAACTCCTGCTCTTGCAAATATTCAAGCAGCTCAAAGACGGCCTGTTTCTCAACCTGCTTCACAGACAAAACAAGCCTCAAGTTTGCGATCCAAAAGTACGCCAAAGCTGAACAAGGATGAAGATGATGATTTATGGGGTTCCATAGCAGCTCCTGCTCCAAAAACCGCAAAACAATTAAATTTGAAATCAACTGTAACTGATGAAGATGATCCCTGGGCTGCCATTGCTGCTCCTGCACCCACCACAAAGGCCAGGCCCTTATCAGGTGGCAGAGGTCGGGGAGCTAAACCTGCTGCTCCAAAATTAGGTGCTCAGCGGATAATCCGCTGA 2373 0.4408 MFKFLKEVVGGSGTGLKDLPYNIGEPYPSAWGSWVHYRGTSKDDGSAVSIFSLSGTNAQDGHLAAGRNGVKRLRTVRHPNILSFLHSTEIETHDAGSPKVTIYMVTEPVMLLSDKIKELGLEGTQRDEYYAWGLHQIAKAVSFLNNDCKLVHGNVCMASVVVTQTLDWKLHAFDVLSEFDGSNETSSGQMLQYAWLVGAQYKPMELVKSDWAVIKKSPPWAIDSWGMGCLIYELFSGMKLVKTEELRNTVSIPKSLLPDYQRLLSSTPSRRLNTSKLIENSEYFQNKLVDTIHFMEILSLKDSVEKDTFFRKLPNLAEQLPRQIVLKKLLPLLASALEFGSAAAPALTALLKVGSWLSAEEFRVKVLPTIVKLFASNDRAIRVGLLQHIDQYGESLSAQVVDEQVYPHVATGFSDTSAFLRELTLKSMLILAQKLSHRTISGSLLKHLSKLQVDEEPAIRTNTTILLGNIASYLNEGTRKRVLINAFTVRALRDTFPPARGAGIMALCATSSYYDITEVATRILPNVVVLTIDPDSDVRSKAFQAVDQFLQLAKQYYEKTNTADATGGAGMGISSIPGNASLLGWAMSSLTLKGKPSDHAPVPSVSSSALTPTSSNASSAIDTPSTAPIRVSSAPDFAEHPVPTSPTSTDGWGELENGIDEERENDKDGWDDLEPLEETKPTPALANIQAAQRRPVSQPASQTKQASSLRSKSTPKLNKDEDDDLWGSIAAPAPKTAKQLNLKSTVTDEDDPWAAIAAPAPTTKARPLSGGRGRGAKPAAPKLGAQRIIR 790
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4176g00040 790 MobiDBLite consensus disorder prediction 601 630 - -
Gabi4176g00040 790 Gene3D Phosphorylase Kinase; domain 1 12 107 - -
Gabi4176g00040 790 SUPERFAMILY Protein kinase-like (PK-like) 36 286 IPR011009 -
Gabi4176g00040 790 ProSiteProfiles Protein kinase domain profile. 2 284 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4176g00040 790 MobiDBLite consensus disorder prediction 691 713 - -
Gabi4176g00040 790 MobiDBLite consensus disorder prediction 656 678 - -
Gabi4176g00040 790 Pfam Protein kinase domain 37 251 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4176g00040 790 SMART serkin_6 37 284 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4176g00040 790 MobiDBLite consensus disorder prediction 594 790 - -
Gabi4176g00040 790 Gene3D - 282 560 IPR011989 -
Gabi4176g00040 790 Gene3D Transferase(Phosphotransferase) domain 1 115 279 - -
Gabi4176g00040 790 PANTHER SCY1-RELATED S/T PROTEIN KINASE-LIKE 9 771 - -
Gabi4176g00040 790 SUPERFAMILY ARM repeat 293 551 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4176g00040 Gabi-Chr4176 385011 402056 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4176g00040 70 291 MAP Kinase Kinase Kinase AT5G66850 25.630 6.10e-07 51.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK SCY1_SCYL1 Gabi4176g00040 Pkinase 1.1e-08 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4176g00040 K08876 - gmx:100792884 1371.3