Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4176g00026 ATGAGTTGTTGTTTCCCGTGTTGTGGCTATTATAAAAGCCAAAGCAAGTGGGAGCACGAATCTAGTACACCGCAGGAAAATAATGTAACAGCAAAAACACCAGATATGAAGAAACAAAGGCCAGACGAACAAATCCAAGTTGACACTGCAAATATCAACGCAAAAAATTTCACTTTCCGTGAGCTAGCAACTGCAACAAAGAATTTCCGTCAAGAATGTGTGATTGGTGAAGTAGGCTTCGGCAGGGTCTACAAAGGTGTAATTCCTGCAACAGGACAGGTGGTGGCCGTGAAACAATTCGACCGACATGGGATGCAAGGAAGTAAGGAATTTCTGGCTGAGGTTTCGACCCTAAGTTTCTTGCACCATGAAAATCTGGTCAATCTCATTGGTTATTGTGCTGATGGTGATCAACGTCTTTTGGTGTATGAATTCATTCTTGGGCGTACTCTAGAAGACCATCTTTTTGATAATAATGGGAATCAACCAGCATTAAATTGGTTCTACAGAATGAAAGTAGCAGCGGGTGCATCTAAAGGACTAGAGTACTTGCATGACATTGCCAATCCCCCAGTTATATACCGGGACTTGAAAGCATCCAACGTCTTGCTGGATCCTGATCTTAATACAAAACTAATGGATTTTGGAATGGCAAGGTTTTCTGGTGAAGACAAGATGAACCATGCACCTCCAAGAGTTATGGGTACCTATGGTCACTGTGCTCCAGAGTATGTAAGAACAGGACAATACACCTTGAAATCAGATGTATACAGTTTCGGAGTTGTCTTGCTAGAACTCATAACTGGACGTCGTGCCATTGACACCACAAGACCAAACAATGAACAAAACTTAGTTTCATGGGCACAACCCTTATTCAGGGACCCAAAAAGATATCCAGATATGGCAGATCCACGTCTTAATAAACAGTTCCCAGAAAAGGATCTCAATCAAGCTGTTGCAATAGCTGCCATGTGCTTACAGGATGAACCAGAAGCACGTCCTTTTATCAGTGATGTTGTAACTGCTCTGAGTTTTCTTTCAACGGCTCCCCCAGATGTTGTTTCAGCTTCTCTACCACCTGCCACCTCGGTCTCTAAGGAGAGTTGGTCTGATGAAAGCCAAAGCGAAAGCGGAACAGAAAGTGAGAGCCAAAGTGAAAGTGGAAGTGAGAGTGGAAGTGAAGAAGAAGAAGAAGCTGGTGAGGAGAGTCGCAGGAGAGACAGTGCAAAATACCAAGGAAGTGATGTCTCTGATGATTACTATAAGAATGGAAAAAAACATGGTCGTGTCCAATCAAGCCGCAAAAGCAGCTCGAGATCAAGGAATGGACCAATTAGTTCAGGTTCAGGAGATAGAAAGGTTTCTTGCAGCAAAAAAAGCAGTAGGAAATCGCATGATGTTGTTGGTACTTTAAACCAGAAGAGCAGCAGAAAATCTTGTGTCAAAGATTTAAGCCAAAAGAGCAGCAAAAAAACTTCTGTCAACGATTTAAGCCAGAGGAGCAGCAAAAAATCTTCCACCAATAAGAACAGTAGAAAATCTTCAGTGAGAATCTTAAGCCACAAGAGTAGCACGGAATCGAAGGATGGAGGTGCTTCCTTAAGCCACCATAGCAGCAGTTTGGCATCAGAGGATGGAAGAGTTATGTTTGAGCATGGCAGCAATGGGCTATCACAAGGAAACATATCTTTTGGCCTTACCAGCAGCAGCAGCAGAAGCAGAACAGATGAGGGAAGTGTTCACTCTTTTGAGTATATTAGCAGCAGTGGATCAGATGAGGGAAGTGTTCATTAA 1794 0.4292 MSCCFPCCGYYKSQSKWEHESSTPQENNVTAKTPDMKKQRPDEQIQVDTANINAKNFTFRELATATKNFRQECVIGEVGFGRVYKGVIPATGQVVAVKQFDRHGMQGSKEFLAEVSTLSFLHHENLVNLIGYCADGDQRLLVYEFILGRTLEDHLFDNNGNQPALNWFYRMKVAAGASKGLEYLHDIANPPVIYRDLKASNVLLDPDLNTKLMDFGMARFSGEDKMNHAPPRVMGTYGHCAPEYVRTGQYTLKSDVYSFGVVLLELITGRRAIDTTRPNNEQNLVSWAQPLFRDPKRYPDMADPRLNKQFPEKDLNQAVAIAAMCLQDEPEARPFISDVVTALSFLSTAPPDVVSASLPPATSVSKESWSDESQSESGTESESQSESGSESGSEEEEEAGEESRRRDSAKYQGSDVSDDYYKNGKKHGRVQSSRKSSSRSRNGPISSGSGDRKVSCSKKSSRKSHDVVGTLNQKSSRKSCVKDLSQKSSKKTSVNDLSQRSSKKSSTNKNSRKSSVRILSHKSSTESKDGGASLSHHSSSLASEDGRVMFEHGSNGLSQGNISFGLTSSSSRSRTDEGSVHSFEYISSSGSDEGSVH 597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4176g00026 597 FunFam probable serine/threonine-protein kinase RLCKVII 41 145 - -
Gabi4176g00026 597 PANTHER OS07G0668900 PROTEIN 4 353 - -
Gabi4176g00026 597 FunFam Serine/threonine-protein kinase PBS1 146 358 - -
Gabi4176g00026 597 Gene3D Phosphorylase Kinase; domain 1 29 145 - -
Gabi4176g00026 597 SMART serkin_6 69 346 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4176g00026 597 MobiDBLite consensus disorder prediction 554 597 - -
Gabi4176g00026 597 ProSitePatterns Serine/Threonine protein kinases active-site signature. 192 204 IPR008271 GO:0004672|GO:0006468
Gabi4176g00026 597 MobiDBLite consensus disorder prediction 19 40 - -
Gabi4176g00026 597 MobiDBLite consensus disorder prediction 486 542 - -
Gabi4176g00026 597 Gene3D Transferase(Phosphotransferase) domain 1 148 348 - -
Gabi4176g00026 597 MobiDBLite consensus disorder prediction 435 454 - -
Gabi4176g00026 597 MobiDBLite consensus disorder prediction 398 426 - -
Gabi4176g00026 597 ProSiteProfiles Protein kinase domain profile. 69 346 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4176g00026 597 SUPERFAMILY Protein kinase-like (PK-like) 55 378 IPR011009 -
Gabi4176g00026 597 MobiDBLite consensus disorder prediction 350 597 - -
Gabi4176g00026 597 Pfam Protein kinase domain 71 340 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4176g00026 597 MobiDBLite consensus disorder prediction 358 388 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4176g00026 Gabi-Chr4176 263776 266580 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4176g00026 4 391 Glycoside Hydrolase AT3G07070 56.931 8.20e-157 454
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Gabi4176g00026 Pkinase 3.6e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4176g00026 - - gmx:100805544 603.594