Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4176g00022 CACAGGGGTATAAATGATTCTGAATTGAAAGATAAGTTGCGGAAATTGGTTAAGAGTATCGTGGACGGCGATGACTACCAGGTGAACGCTGCCGACGAGGCTATCATTGCTCTTTCTTCTCTCAAGGATTTGAAATGCAGCACCTCCCTCTCACAGAAATTGAACCATGTACCTGTTCCTGCACAGTTTCGATGCCCCATCTCAGGACAATTAATGACTGATCCTGTAATCTTGGCCAGTGGACAGACTTATGATCGGCCATTCATCCAGAGGTGGCTGAATGAAGTCTACAGAATTTGCCCTGAGAGCCAACAAGTCCTCTCTCACTCTATCCTTACACCGAATTGCCTGGTCCAAGACTTGATTTCACAGTGGTGCAAAGAGCATGGAATTGAGCTACCAAAGCCTGTAGGGGACACTGATGATGGAGAAGTAACTGATGCACATATACAACGTTTACATTCATTGCTTCATAATTTGTCATTGTCTGTTTCTGATCAAAAAGAAGGTGCAAAAGAGCTTCGTCAGTTAACAAAACGAATGCCTTCATTTCGAAGGCTTTTTTGGGAGCCAGAAATGATTCAACGATTGCTCAGTCCATTATTAGCTGGCACGGCTTGTATTGATCCTGAGCTCCATGAGGACTTGATCACAACTGTTCTAAATCTCTCAATTCATGAAGATAATAAGAAAGTGTTTGGAGAGGATGAAAAGGTTATCTCCCTGCTTATTGATTCCTTGAAATCCGGAACCATTCAAACAAGAAGCAATGCTGCAGCAGCTATTTTCTCATTATCAGCGCTTGATTCCAACAAGCTCATTATTGGAAAATCTGGAGCTATCAAATATTTGGTTCACCTTTTAGAGGGGGGAAATTTATCAGCAATGAAAGATGCTGCTTCAGCCATATTCAACCTATGTATTGAGCATGAAAATAGAGAGAAGACTGTGAGAGAAGGGGCAGTACAGGTTATTCTTAGCAAGATCATGGACCACATTCTAGTTGATGAGTTGTTGTCTCTGCTGGCACTCCTCTGTAGCCATACCGTGGCTATTGAAACATTGGGAAATAATGGTGCTGTCCCCTTCTTGCTGGGTATTTTAAGAGAGAGCATGTCAGAACGCATCAATGAAAACTCTGTTGCAATCTTATATGTAATCTGTCTCCATGATAGGACAAAGCGGAAGGAAATTGGAGAAGAAGAAATGGCCAATGGTACACTGTCTAAGCTAGCACAATCAGGGACTTCAAGGGCCAAGAGAAAAGCTACCGGTATTCTTAATAGGCTCGACTTACCTCACTCCTCCACTTATACCACTTAA 1323 0.4248 HRGINDSELKDKLRKLVKSIVDGDDYQVNAADEAIIALSSLKDLKCSTSLSQKLNHVPVPAQFRCPISGQLMTDPVILASGQTYDRPFIQRWLNEVYRICPESQQVLSHSILTPNCLVQDLISQWCKEHGIELPKPVGDTDDGEVTDAHIQRLHSLLHNLSLSVSDQKEGAKELRQLTKRMPSFRRLFWEPEMIQRLLSPLLAGTACIDPELHEDLITTVLNLSIHEDNKKVFGEDEKVISLLIDSLKSGTIQTRSNAAAAIFSLSALDSNKLIIGKSGAIKYLVHLLEGGNLSAMKDAASAIFNLCIEHENREKTVREGAVQVILSKIMDHILVDELLSLLALLCSHTVAIETLGNNGAVPFLLGILRESMSERINENSVAILYVICLHDRTKRKEIGEEEMANGTLSKLAQSGTSRAKRKATGILNRLDLPHSSTYTT 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4176g00022 440 ProSiteProfiles U-box domain profile. 58 132 IPR003613 GO:0004842|GO:0016567
Gabi4176g00022 440 CDD RING-Ubox_PUB 60 112 IPR045210 -
Gabi4176g00022 440 Gene3D - 135 433 IPR011989 -
Gabi4176g00022 440 SUPERFAMILY RING/U-box 55 136 - -
Gabi4176g00022 440 SUPERFAMILY ARM repeat 150 430 IPR016024 -
Gabi4176g00022 440 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 57 132 IPR013083 -
Gabi4176g00022 440 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 279 321 IPR000225 GO:0005515
Gabi4176g00022 440 Pfam Armadillo/beta-catenin-like repeat 271 307 IPR000225 GO:0005515
Gabi4176g00022 440 SMART arm_5 268 308 IPR000225 GO:0005515
Gabi4176g00022 440 SMART arm_5 347 389 IPR000225 GO:0005515
Gabi4176g00022 440 SMART Ubox_2 62 125 IPR003613 GO:0004842|GO:0016567
Gabi4176g00022 440 Pfam U-box domain 59 129 IPR003613 GO:0004842|GO:0016567
Gabi4176g00022 440 PANTHER U BOX DOMAIN-CONTAINING 37 429 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4176g00022 Gabi-Chr4176 233793 238015 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4176g00022 121 439 U-box Gene Family AT3G07360 53.538 4.75e-103 308
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4176g00022 - - gmx:100806132 554.288