Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4176g00012 ATGGAGAGGAATGCATCTGCATTGTTTGTGATAATGATATTTACTCTTTCAACTACTCTATTTTTCTGTCTATCTGAAGGGCTCAATGCAGAGGGTAAATACCTTCTGGACATAAAAGGGAGATTGTTTAACAAATACAACCATCTAGATAACTGGAATTCAAGTGATTCCACACCTTGTGGTTGGAAGGGGGTCAACTGCAGCACTGGTGGCAATCCTGTGGTGGAGTCTCTAGATTTGCATTCAATGAACCTATCCGGGTCTTTGGCTCCCAGCATTGGTGGTTTGGTTCACTTGCATCACCTTAATCTGTCTCAAAACTTTTTGTCTGGTGTTATTCCCAAGGAAATTGGAAACTGTTCAAGTTTGCAGGTTCTTGGTCTCAACAATAATCTGTTTGAAGGCAGAATTCCTGTTGAAATAGGTAGGCTTTCAGATTTAACAGAATTGTATCTTTACAACAACAGACTTTCTGGGCCTTTTCCAGTGGAAATTGGTAACCTTTCTTCACTCTCAATATTTGTTGCATTCACCAACAATCTCAGTGGATCTTTGCCACCTTCTTTTGGGAAACTTAAAAGATTGAGAAGATTCCGAGCTGGGCAGAATTTGATATCAGGAAGTCTACCCCAAGAGATAGGTGGATGTGAGAGCTTGCAATATCTTGGCTTAACTCAAAATCAGATAACTGGTGAAATTCCAAAAGCACTTGGACTGCTCAAGAACATACAATATTTGGTCATTCGGGAAAATAACCTTTATGGGGCCATACCTAAAGAGCTTGGAAACTGTACTAGTCTGGAGGTTCTTGCTTTGTATCAGAATAATCTTGTGGAAGCAATTCCTAAGGAGCTGGGAAACCTTGTGCTCCTAAAGAGGTTATACCTTTACCGGAATAAGTTGACAGGAAAAATTCCAAAGGAGATTGGGAACCTTTCTCTTGCAACAGAGATTGATTTTTCAGAAAACTTCCTGGCAGGAGAGATACCGGTTGAGTTTGTCAAAATAAGAGGGCTACAATTGCTTCATCTTTTCCAGAACAAGCTAACTGGTGTCATCCCACATGAGCTTACCAGCTTGAAAAACCTGATTAAGCTAGATCTCTCTATTAATTATCTCAAAGGTGCTATTCCTGTTGGGTTTCAAGACTTGACCAACTTGACCTCCCTGCAACTCTTCAACAACTCACTAAGTGGTACCATTCCTCAATCACTGGGAGCAAATAGTCCACTTTGGGTGCTTGATTTATCATACAACTACTTGGTGGGAAGACTGCCAGTCCATCTTTGCCAACATTCTGACTTGATGCTGTTGAACTTAGGATCAAACAAGCTCACTGGAAATATTCCTTATGGAATTACAAGCTGCAAGTCCTTGGTGCAACTTCGTCTCTTTGGTAACAACCTCAGAGGCAGGTTTCCTTCTAATTTGTGCAACCTCGTTAATCTTTCTGCAGTGGAGTTGGATCAGAATAACTTCACTGGGCCTATTCCTCCACAAATTGGTAACTGCAAGAATTTGCAAAGACTTCATCTTTCAAAAAATCACTTCTTGTCTGAATTACCAAGAGAAATAGGTAACCTCTCAAAGTTAGTCACCTTCAATGTCTCGTCAAATTATCTTTTAGGTAGAGTGCCATTGGAACTGTTCAATTGCAGGAATCTCCAAAGACTTGATCTCAGCCACAACAACTTCATAGGTTCTTTTCCAGATGAGATAGGAACTCTTTCACAATTGGAGCTTCTAAGGCTCTCAGAAAATAATTTTTCTGGTAATATTCCTGTGGCAGTGGGAAAACTCTTTAGATTGACTGAGCTGCAAATGAGTGGCAACTCATTTTGTGGTTGCATTCCACCTGAGTTGGGTGCTCTCTCATCTTTACAGATTGCATTGAATCTCAGTTATAATAAACTCTCATGCCAGATCCCCTCTGAGCTTGGGAACCTTATTATGCTAGAATCACTCCAACTCAACAATAACCATTTGAGTGGTACAATCCCGTTCTCCTTTGACAAACTGTCAAGTTTACTGGCCTTCAACTTCTCAAACAATGATCTTACTGGCCGTTTGCCTTCATTACCTCTCTTTCAAATCTCAACATTCAGCTGCTTTGCTGGAAACAAAGGACTTTGTGGAGGAAAGCTTGGCATTTGCCCAAATTCAGCTTCACCCTCCCCTCCAAATAAACTAGGGAAAGTTTTGGCTATAGCTGCAGCTGTTGTTAGCGGGATTTCTTTGGTTTTAATAGTAGTCATTTTATATCTCATGAGAAGTCCATTGGACCCTATTGTGGGGCAGCAAGATATTAATACACCATACTCTCATCCTGTTTCAGACTTGTACTTCTTCCAAAAGGAGGAGCTAACTTTCCAAGATGTGGTTGAAGCTACTGAAAATTTTCATTCCAAATATGTAATTGGAAAAGGAGGTGTTGGAACTGTGTATAGAGCAGATATATCAGTTGGTCATACAATTGCTGTTAAGAAGCTGACATCAAGCAGTGACAGCAGCATCAACGTAAATGCCAGCTTCCGCGCTGAAATCTTAACTTTAGGAAAAATAAGGCATCGGAATATAGTGAAATTATATGGTTTCTGCAATTACCATGGCTCCAATATACTTCTTTACGAGCACATGGCAAGGGGCAGTTTAGGGGAGTTAATTCATGAACCATCATCCTCTAGTCTTGATTGGCATGCTCGGTTTAGGATTGCCCTTGGAACTGCACAAGGGCTCTCTTATTTGCACCATGATTGCAAGCCTAGGATTATCCACCGTGACATAAAGCCCAATAACATACTCATTGATCATGAATTTGAAGCTCATGTTGGGGATTTTGGCTTGGCAAAGCTGATCGATATGTCATGCTCTAAATCAGTGTCAGCAGTTGTAGGTTCTTACGGCTACATTGCCCCTGAGTATGCATACACAATAAAAGTCACAGAAAAATGCGATGTGTATAGCTATGGAGTTGTCCTTCTGGAGTTACTGACTGGCAAGAAGGCAGTTCAACCGTTGGATCAATGTGGTGATCTTGTGACATGGGTGAGAAATCATATCCACAAACATTCCTTGTCACTAGACATCTTTGACACTCGTTTGGATCTACAAGATGAAATAGATGTGGCTCAAACTTCTGATGTCTTAAAAATTGCTGTGCTCTGCACTGACACGTGTCCTTCTAGACGCCCAACTATGCGTAAAGTCGTGTCGATGCTCACAAGTTCTAGCAAACGGACTCAGCAATCTTCCTTCTCTCCATCTCAAGAATCAAGATGCTAA 3282 0.4095 MERNASALFVIMIFTLSTTLFFCLSEGLNAEGKYLLDIKGRLFNKYNHLDNWNSSDSTPCGWKGVNCSTGGNPVVESLDLHSMNLSGSLAPSIGGLVHLHHLNLSQNFLSGVIPKEIGNCSSLQVLGLNNNLFEGRIPVEIGRLSDLTELYLYNNRLSGPFPVEIGNLSSLSIFVAFTNNLSGSLPPSFGKLKRLRRFRAGQNLISGSLPQEIGGCESLQYLGLTQNQITGEIPKALGLLKNIQYLVIRENNLYGAIPKELGNCTSLEVLALYQNNLVEAIPKELGNLVLLKRLYLYRNKLTGKIPKEIGNLSLATEIDFSENFLAGEIPVEFVKIRGLQLLHLFQNKLTGVIPHELTSLKNLIKLDLSINYLKGAIPVGFQDLTNLTSLQLFNNSLSGTIPQSLGANSPLWVLDLSYNYLVGRLPVHLCQHSDLMLLNLGSNKLTGNIPYGITSCKSLVQLRLFGNNLRGRFPSNLCNLVNLSAVELDQNNFTGPIPPQIGNCKNLQRLHLSKNHFLSELPREIGNLSKLVTFNVSSNYLLGRVPLELFNCRNLQRLDLSHNNFIGSFPDEIGTLSQLELLRLSENNFSGNIPVAVGKLFRLTELQMSGNSFCGCIPPELGALSSLQIALNLSYNKLSCQIPSELGNLIMLESLQLNNNHLSGTIPFSFDKLSSLLAFNFSNNDLTGRLPSLPLFQISTFSCFAGNKGLCGGKLGICPNSASPSPPNKLGKVLAIAAAVVSGISLVLIVVILYLMRSPLDPIVGQQDINTPYSHPVSDLYFFQKEELTFQDVVEATENFHSKYVIGKGGVGTVYRADISVGHTIAVKKLTSSSDSSINVNASFRAEILTLGKIRHRNIVKLYGFCNYHGSNILLYEHMARGSLGELIHEPSSSSLDWHARFRIALGTAQGLSYLHHDCKPRIIHRDIKPNNILIDHEFEAHVGDFGLAKLIDMSCSKSVSAVVGSYGYIAPEYAYTIKVTEKCDVYSYGVVLLELLTGKKAVQPLDQCGDLVTWVRNHIHKHSLSLDIFDTRLDLQDEIDVAQTSDVLKIAVLCTDTCPSRRPTMRKVVSMLTSSSKRTQQSSFSPSQESRC 1093
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4176g00012 1093 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase 765 878 - -
Gabi4176g00012 1093 FunFam Putative leucine-rich repeat receptor-like protein kinase 287 377 - -
Gabi4176g00012 1093 Pfam Leucine rich repeat N-terminal domain 29 68 IPR013210 -
Gabi4176g00012 1093 SUPERFAMILY Protein kinase-like (PK-like) 774 1073 IPR011009 -
Gabi4176g00012 1093 SMART serkin_6 800 1073 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4176g00012 1093 FunFam Leucine-rich repeat receptor-like protein kinase PEPR1 27 185 - -
Gabi4176g00012 1093 Gene3D Ribonuclease Inhibitor 27 176 IPR032675 -
Gabi4176g00012 1093 FunFam Probable leucine-rich repeat receptor-like protein kinase At2g33170 186 279 - -
Gabi4176g00012 1093 ProSiteProfiles Leucine-rich repeat profile. 554 576 IPR001611 GO:0005515
Gabi4176g00012 1093 SUPERFAMILY L domain-like 455 715 - -
Gabi4176g00012 1093 SUPERFAMILY L domain-like 291 451 - -
Gabi4176g00012 1093 MobiDBLite consensus disorder prediction 1073 1093 - -
Gabi4176g00012 1093 Gene3D Ribonuclease Inhibitor 177 279 IPR032675 -
Gabi4176g00012 1093 Pfam Leucine rich repeat 337 397 IPR001611 GO:0005515
Gabi4176g00012 1093 Pfam Leucine rich repeat 553 612 IPR001611 GO:0005515
Gabi4176g00012 1093 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 408 722 - -
Gabi4176g00012 1093 ProSiteProfiles Protein kinase domain profile. 800 1085 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4176g00012 1093 ProSitePatterns Serine/Threonine protein kinases active-site signature. 923 935 IPR008271 GO:0004672|GO:0006468
Gabi4176g00012 1093 Gene3D Transferase(Phosphotransferase) domain 1 879 1092 - -
Gabi4176g00012 1093 SMART LRR_typ_2 649 672 IPR003591 -
Gabi4176g00012 1093 SMART LRR_typ_2 505 528 IPR003591 -
Gabi4176g00012 1093 SMART LRR_typ_2 144 168 IPR003591 -
Gabi4176g00012 1093 SMART LRR_typ_2 360 383 IPR003591 -
Gabi4176g00012 1093 SMART LRR_typ_2 552 576 IPR003591 -
Gabi4176g00012 1093 SMART LRR_typ_2 600 624 IPR003591 -
Gabi4176g00012 1093 SMART LRR_typ_2 288 312 IPR003591 -
Gabi4176g00012 1093 SMART LRR_typ_2 384 408 IPR003591 -
Gabi4176g00012 1093 SMART LRR_typ_2 480 504 IPR003591 -
Gabi4176g00012 1093 SMART LRR_typ_2 96 120 IPR003591 -
Gabi4176g00012 1093 Pfam Protein kinase domain 801 1071 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4176g00012 1093 Gene3D Ribonuclease Inhibitor 280 379 IPR032675 -
Gabi4176g00012 1093 Gene3D Phosphorylase Kinase; domain 1 767 878 - -
Gabi4176g00012 1093 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 336 1074 - -
Gabi4176g00012 1093 SUPERFAMILY L domain-like 31 323 - -
Gabi4176g00012 1093 Gene3D Ribonuclease Inhibitor 381 724 IPR032675 -
Gabi4176g00012 1093 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 879 1090 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4176g00012 Gabi-Chr4176 164135 168159 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4176g00012 53 1073 Receptor kinase-like Gene Family AT1G73080 39.568 0.0 660
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Gabi4176g00012 Pkinase 8.1e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4176g00012 - - vvo:131644205 1643.63