Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4176g00007 ATGAAAGGTAAAGGGGGACCCGAGAATGCTCTGTGCACTTATAGAGGAGTGAGGCAGAGGACTTGGGGAAAATGGGTTGCAGAAATAAGAGAACCCAAACGTGGCACTAGGCATTGGCTTGGCACTTTCAACACCTCTATTGAAGCCGCACTTGCTTATGACAATGCTGCTAGAAGGCTCTACGGTGCATCAGCCAAGCTCAATTTGCCAACACCTCGAGTTCCTCCATCTCCAAACATAGACAACAACTATTGTAATAAAGTAGTTGATCATAATTTGATCATTCCTCCGAGGTTTGTATCTAACTCCAACAAGACTTCGTGTAATAATAATACGGTGCTTCTTGGAGACATGAGCTGTACTGGGGTGTTCTGGGAGAGTAGTTTAGACCATGAAGCACAAAGTCTTACCCGGAGCACTAGTAACTTCGTTAGGGATGATTTTCTGTAA 450 0.4444 MKGKGGPENALCTYRGVRQRTWGKWVAEIREPKRGTRHWLGTFNTSIEAALAYDNAARRLYGASAKLNLPTPRVPPSPNIDNNYCNKVVDHNLIIPPRFVSNSNKTSCNNNTVLLGDMSCTGVFWESSLDHEAQSLTRSTSNFVRDDFL 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4176g00007 149 CDD AP2 12 70 IPR001471 GO:0003700|GO:0006355
Gabi4176g00007 149 SUPERFAMILY DNA-binding domain 13 71 IPR016177 GO:0003677
Gabi4176g00007 149 SMART rav1_2 13 76 IPR001471 GO:0003700|GO:0006355
Gabi4176g00007 149 ProSiteProfiles AP2/ERF domain profile. 13 70 IPR001471 GO:0003700|GO:0006355
Gabi4176g00007 149 Pfam AP2 domain 13 62 IPR001471 GO:0003700|GO:0006355
Gabi4176g00007 149 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 1 99 - -
Gabi4176g00007 149 Gene3D AP2/ERF domain 13 71 IPR036955 GO:0003700|GO:0006355
Gabi4176g00007 149 PRINTS Ethylene responsive element binding protein signature 14 25 IPR001471 GO:0003700|GO:0006355
Gabi4176g00007 149 PRINTS Ethylene responsive element binding protein signature 36 52 IPR001471 GO:0003700|GO:0006355
Gabi4176g00007 149 FunFam Ethylene-responsive transcription factor 2 12 71 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4176g00007 Gabi-Chr4176 114405 114854 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4176g00007 1 72 AP2-EREBP Transcription Factor Family AT5G18450 81.944 2.98e-38 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Gabi4176g00007 AP2 4.8e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4176g00007 - - mtr:11435109 149.058