Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4176g00005 ATGGAAGAAGAGAAAGAAGCAGTGATGGTAACACCAGGAGAAGTGGTGGGTCGAAGTTGGGATGTGAAAGCCGGAAGAGGAGCATACGCGTCGCTTCACAACAACACCGTTTACGCCACCCTAACTGGCTTCCTCCGTACAATACCTCCGGCGCCGGAATCTCCTGACCAGAGACCTACCGTTGAAGTAACTGGTCACAAGGCTCATGGACCTGTTCCAGAGCCTGGATCTATTGTCATTGCGCGTGTCACCAAAGTAATGGCTAGGTCCGCTTCAGCTGATATTGTGTGTGTTGGACAAAAGTCTGTTAGAGAAAAATTTACTGGCATCATTAGGCAGCAAGATGTTAGAGCAACTGAGATTGATAAAGTAGATATGCACTTATCTTTTCGTCCCGGTGACATTATTAGAGCTCTTGTGCTTTCTCTTGGAGATGCCCGGGCGTACTTTCTGTCGACGGCAAAGAATGAACTTGGTGTTGTCTCTGCAGAAAGCACTGCTGGTGCAACAATGGTTCCAATAAGTTGGACAGAGATGCAGTGCCCATTAACTGCTCAGATTGAGCAAAGAAAGGTTGCAAAGGTTGCAACCACACGAGAACGCAAGCTTATATTTTACTTTGCAAATTATTTTACATACAAAAAAACAATGGCTTCAGCTTCGCTTCATCTCCTTCCGCCACTCGCCAAATTCTGGTCTTCAATAGCCCCTCTGTCCCATGGTTACACCCATCAATTCGCTTCCTTAACTTCATTCAGATTCGCCTCTACTACTTCTTCTACCAAAACCATTTTCCTTCCCAAACCTCTCGCCGTGCGTTTTTCTCTAACAGACTCCGACTCGCCCAAATCCATAGAACCTGACCCTCAAGCTCTTCTCCAAGATATTGCTGATAGTTTTGATCTTCCTCCTGATTACTTTGCGCAGCTTCCCCGCGATCTTCGATTAGACCTAAACGACGCCGCCTTCGACCTTTCAAACGGACCTATCTTGGATGAGTGTGGTCAAGAGTTGGGAGAGACACTGCTAAACCTCTCTCGAGCATGGGAACTTGCTGACACGTCAACCTCCCACTCTTTAGCGGCAAAGCTTCCTTTGATAGAGGCCAATTTGTCAGGCACTGCCAAATCAGCACTTGGCAAGCGTTTGGTATCTGCTGGAAGAAGGTTTCAATCAATGGGACAGTATGGCCAAGGTGAGCCACAGAAGATTGCAAAATCAATGATTGCAGCAGGGAGAGCTTTATCTGCTAGTTCAACTGCAGCAATAGATGAACAACCCAAAGAGGAAACTAGGATGCTGAAGTTTGGAGATTTGCAGGTTGAATTAACACCAGATAAAGCCAATATTGGGGCTGTAATTGGATTTGTTTTTGGGATTCTTTCTTGGGAAATAGCTCAGGGAATTCAAAACATTCCCGAGAGTTCTTTGGAGTATGCAAATGACAATGCTTTGCAGCTTGCTAAGTCTTTAAGGGGAGCATTACTTGCTCTTTTCTACACCTCCACGATCTTGTCTGCATTTACTATGGTGGGACTTGTTCTACTTGGTATACAGCTCAACAGCCATATGGCTTCTTTCTCTTGCTCAGCCACCGAACTCACCCCACTCTTCACTTCCACAACCAACGCAACCGCCGCTGCGAACTACCTCTGCACCCAATTCGATGCCATCTCGAAAAGGCTCACAGACACAACCTACGCCGTGGACAACACCTACCTTCTCTTCTCAGCCTATCTCGTCTTCTCCATGCAGCTTGGTTTCGCCATGCTCTGCGCCGGTTCAGTTCGAGCCAAGAACACCATGAACATCATGCTCACCAACGTCCTCGACGCCGCCGCCGGCGGCCTCTCCTACTACCTCTTCGGTTTCGCTTTCGCCTTCGGAGCCCCCTCCAACGGTTTCATCGGCCGTCACTTTTTCGGTCTTAAGGATTACCCATCACCTTCGGGAGACTACAGTTTCTTCCTTTATCAATGGGCATTCGCCATAGCCGCCGCAGGAATCACCAGCGGCTCCATAGCCGAGAGGACTCAGTTCGTCGCATACCTCATTTATTCAACCTTCTTGACAGGGTTCGTCTACCCCATCGTTTCCCATTGGTTCTGGTCATCAGACGGGTGGGCCAGCCCGACCCGGAGCGATGCTAACGTTTTATTCGGGTCCGGCGTCATCGACTTTGCCGGCTCCGGCGTTGTTCACATGGTTGGTGGCATAGCAGGGTTCTGGGGGGCTTTTATTGAAGGGCCAAGAATTGGCCGGTTCGACCGGACCGGCCGGTCCGTTGCCTTACGTGGCCACAGCGCTTCCTTGGTTGTGCTCGGTTCGTTTTTATTATGGTTCGGATGGTACGGGTTTAATCCCGGTTCGTTCCTGACCATCGTGAAAGGCTACGGTGGAGCGCGTGATTATTATGGTCAATGGAGTGCTATAGGAAGGACAGCTGTCACGACGACATTAGCTGGAAGCACTGCAGCTCTGACAACATTGTTCGGCAAGCGGTTATTGGTGGGCCACTGGAACGTGGTTGACGTGTGTAACGGTCTGCTTGGTGGTTTCGCTGCAATCACTTCGGGTTGCTCCGTTGTGGAACCATGGGCTGCGATCGTGTGCGGGTTTGTGGCGGCGTGGGTTTTGATTGGGCTCAACAAGCTGGCAGCGAAACTGGAGTACGATGATCCGCTGGAGGCGGCGCAACTCCACGGCGGGTGCGGCGCGTGGGGGGTGTTGTTCACGGGATTGTTTGCGAAGAAGGAGTACGTGGGGGAGGTATACAGCGTGGGGAGGCCGTACGGGTTGTTGATGGGTGGCGGTGGGAGGTTGTTGGCGGCGCAGGTAATTCAGATATTGGTGGTGATTGGGTGGGTGACGGCGACCATGGCTCCTTTGTTTTATGTGCTTCATAAGATGAATTTGTTGAGGATATCGAGGGATGAGGAGGGTGCGGGGATGGATTTTACAAGGCATGGTGGGTTTGCTTATGCGTATCATGATGAAGATGATGGGTCCACTAAGAACGGAGTGTTTATGATGGGTAGGATAGAACCCGCGAGCACAAGTCCCTCCAACTTCACCACACCGGAAACACAACGAGTGTGA 3099 0.5037 MEEEKEAVMVTPGEVVGRSWDVKAGRGAYASLHNNTVYATLTGFLRTIPPAPESPDQRPTVEVTGHKAHGPVPEPGSIVIARVTKVMARSASADIVCVGQKSVREKFTGIIRQQDVRATEIDKVDMHLSFRPGDIIRALVLSLGDARAYFLSTAKNELGVVSAESTAGATMVPISWTEMQCPLTAQIEQRKVAKVATTRERKLIFYFANYFTYKKTMASASLHLLPPLAKFWSSIAPLSHGYTHQFASLTSFRFASTTSSTKTIFLPKPLAVRFSLTDSDSPKSIEPDPQALLQDIADSFDLPPDYFAQLPRDLRLDLNDAAFDLSNGPILDECGQELGETLLNLSRAWELADTSTSHSLAAKLPLIEANLSGTAKSALGKRLVSAGRRFQSMGQYGQGEPQKIAKSMIAAGRALSASSTAAIDEQPKEETRMLKFGDLQVELTPDKANIGAVIGFVFGILSWEIAQGIQNIPESSLEYANDNALQLAKSLRGALLALFYTSTILSAFTMVGLVLLGIQLNSHMASFSCSATELTPLFTSTTNATAAANYLCTQFDAISKRLTDTTYAVDNTYLLFSAYLVFSMQLGFAMLCAGSVRAKNTMNIMLTNVLDAAAGGLSYYLFGFAFAFGAPSNGFIGRHFFGLKDYPSPSGDYSFFLYQWAFAIAAAGITSGSIAERTQFVAYLIYSTFLTGFVYPIVSHWFWSSDGWASPTRSDANVLFGSGVIDFAGSGVVHMVGGIAGFWGAFIEGPRIGRFDRTGRSVALRGHSASLVVLGSFLLWFGWYGFNPGSFLTIVKGYGGARDYYGQWSAIGRTAVTTTLAGSTAALTTLFGKRLLVGHWNVVDVCNGLLGGFAAITSGCSVVEPWAAIVCGFVAAWVLIGLNKLAAKLEYDDPLEAAQLHGGCGAWGVLFTGLFAKKEYVGEVYSVGRPYGLLMGGGGRLLAAQVIQILVVIGWVTATMAPLFYVLHKMNLLRISRDEEGAGMDFTRHGGFAYAYHDEDDGSTKNGVFMMGRIEPASTSPSNFTTPETQRV 1032
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4176g00005 1032 Gene3D - 66 199 IPR012340 -
Gabi4176g00005 1032 Pfam Exosome component EXOSC1/CSL4 101 143 IPR019495 GO:0000178|GO:0003723
Gabi4176g00005 1032 Pfam Ammonium Transporter Family 573 994 IPR024041 GO:0008519|GO:0016020|GO:0072488
Gabi4176g00005 1032 FunFam Chromosome 1, whole genome shotgun sequence 66 196 - -
Gabi4176g00005 1032 MobiDBLite consensus disorder prediction 50 69 - -
Gabi4176g00005 1032 CDD S1_CSL4 71 161 - -
Gabi4176g00005 1032 Pfam Exosome complex exonuclease RRP4 N-terminal region 9 46 IPR025721 -
Gabi4176g00005 1032 SUPERFAMILY Nucleic acid-binding proteins 72 192 IPR012340 -
Gabi4176g00005 1032 NCBIfam ammonium transporter 570 994 IPR001905 GO:0008519|GO:0016020|GO:0072488
Gabi4176g00005 1032 FunFam Ammonium transporter 551 1009 - -
Gabi4176g00005 1032 ProSitePatterns Ammonium transporters signature. 726 751 IPR018047 GO:0008519|GO:0016020|GO:0072488
Gabi4176g00005 1032 Pfam Protein of unknown function (DUF3082) 444 520 IPR021434 -
Gabi4176g00005 1032 Gene3D Ammonium transporter AmtB like domains 546 1010 IPR029020 -
Gabi4176g00005 1032 PANTHER AMMONIUM TRANSPORTER 538 990 - -
Gabi4176g00005 1032 SUPERFAMILY Ammonium transporter 567 975 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4176g00005 Gabi-Chr4176 71137 86849 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4176g00005 550 1022 Inorganic Solute Cotransporters AT1G64780 81.933 0.0 810
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4176g00005 K03320 K07573 zju:107412282 1506.5