Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4176g00002 ATGGAACGCAACGAGAGCTCGTACTTGCAGCAGCAGCAGCAGCAGAACACCACCGTGACGGCGTCGCCGACTAACGGGGTTTTGGGAAGCAGTGATGGGTCCCACTCTCACTCCCATTCGGAAGTGCAAGTAGAGGCGGCGAAGAGGAAGCGAGGGAGGCCCAGGAAGTACGCTTCCCCAGAAGAAGCTCTAGCCTCTAAGAAGGCTGCTACTACGTCGTCGTTTCAATCTTCCAAGAAATCCCACTCCTCTCTTCCAGGCAATGCAGGACAAGGCTTCACTCCACACATCATTACTGTTGCTGCTGGTGAGGATGTTGGCCAAAAAATTATGTTGTTCATGCAACAAAGCAGGCGTGAGATCTGCATTCTGTCTGCATCTGGTTCCATCTCTAACGCCTCTCTTCGTCAGCCAGCAACATCAGGAGGCAATATTACATATGAGGGTCGATTTGAAATTATTTCACTTACTGGTTCCTATGTCCGTAATGAACTTGGAGGTCGGAGTGGTGGTCTCAGTGTATGCTTATCCAATACTGATGGGCAAATCCTAGGTGGAAGCCTTGCTGGACCCCTTAAAGCCGCTGGTCCAGTTCAGGTCATTGTTGGTACATTTTTTATTGACCCCAAGAAGGACGCTAGTGCTGGAGTAAAAGGTGATGTTTCTACCAGCAAGTTGCCACCACCAGTTGGTGAATTAGTATCAAGTTTGGATTTCCGCTCAGCTGTTGTTTCTTCCAGTGGGAATTCAATCAGGGGAAATGAGGAGCATCAAGCTATTGGGGGAAGCCATTTCATGCTTCAACAATGTGGTGTAAATGTGACACCTTCCTATCCCTTGGACTGGGGAGTTCGTCCGGATTCAAGAAGTGTTGGCTTTGAACTGACAGGAAGAACAGGTGATGGGGCACACCAGTCTCCTGAGAATGGAGACTATGATCAAATTCCTGATTGA 954 0.4895 MERNESSYLQQQQQQNTTVTASPTNGVLGSSDGSHSHSHSEVQVEAAKRKRGRPRKYASPEEALASKKAATTSSFQSSKKSHSSLPGNAGQGFTPHIITVAAGEDVGQKIMLFMQQSRREICILSASGSISNASLRQPATSGGNITYEGRFEIISLTGSYVRNELGGRSGGLSVCLSNTDGQILGGSLAGPLKAAGPVQVIVGTFFIDPKKDASAGVKGDVSTSKLPPPVGELVSSLDFRSAVVSSSGNSIRGNEEHQAIGGSHFMLQQCGVNVTPSYPLDWGVRPDSRSVGFELTGRTGDGAHQSPENGDYDQIPD 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4176g00002 317 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 11 228 IPR039605 GO:0003680
Gabi4176g00002 317 MobiDBLite consensus disorder prediction 1 37 - -
Gabi4176g00002 317 CDD DUF296 94 205 IPR005175 -
Gabi4176g00002 317 MobiDBLite consensus disorder prediction 66 90 - -
Gabi4176g00002 317 Gene3D - 95 221 - -
Gabi4176g00002 317 SUPERFAMILY AF0104/ALDC/Ptd012-like 91 205 - -
Gabi4176g00002 317 Pfam Plants and Prokaryotes Conserved (PCC) domain 95 205 IPR005175 -
Gabi4176g00002 317 MobiDBLite consensus disorder prediction 1 92 - -
Gabi4176g00002 317 ProSiteProfiles PPC domain profile profile. 89 229 IPR005175 -
Gabi4176g00002 317 MobiDBLite consensus disorder prediction 290 317 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4176g00002 Gabi-Chr4176 46445 52452 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4176g00002 44 317 AT-hook Motif Nuclear Localized (AHL) Family AT3G04590 48.254 1.39e-79 246
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4176g00002 - - gmx:100809675 424.861