Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4175g00005 ATGGCAAAACCAGTTTCCCATTCACACCTATTACTCCTTTTAATCTTGTGTCTTGCCATCAATCTTTCAGAGCAGTTACAATTTTCTGAGTCTCAGACACTTCTCAAAGTTCAGCAACTTCTTGGCTATCCATCAGCACTGGGAAGCTTAAACAGTGCCACAGATTATTGCAACATTGAGCCTTCCCCATATTTGACATTAGTTTGCTATGAGGATAACTTGACACAGTTGCATGTTGTTGGCAACAATAATGAGTTTACACCATTGCCTCAAAACTTCTCCTCAGACACTCTTTTTGCCACACTTGGCACTCTATCAAGCTTGAAAGTCCTCTCTTTGGTTTCTCTTGATCTCTGGGGTCTTCTACCTGAAAGCATTGATCAATTGTCTTCATTGGAAATACTTAATATTAGCTCAAATCACTTTTATGGAGCCATCCCAGCTCAACTTTCACTTCTGAGGAACCTGCAGTCAGTGGTGCTTGATCATAACAACTTCAAAGGTCAAATTCCCAACTGGGTAGGTTCCCTTCAAGGTTTGGCTGTGCTTAGTATGAAGAGCAATTGCCTTAGTGGGAGCCTTCCAACTTCAGTGAATGCTCTTCATACCCTGAGAGTGTTAGATCTATCAAATAATCAGTTATCTGGGGAGCTACCTCATCTTGGAAATTTGGCAAACCTTCAAGTTCTGCACTTGGAAAACAACACATTTGGACCTCATTTTCCTTCTCTTCCCACCAAGTTAGTTTCCCTTGTGCTTAGTAATAATAGCTTTATGCTTGGTGTCCCTTCTGATTTAAGTTCTTTCTATCAGCTCCAAAAGCTGGACCTTTCATTGAATGGTTTTGTGGGGCCATTTCCACCATCCTTATTGTCACTACCTTCCATCAATTACCTTGATATTTCTTCAAATAAATTCACTGGGATGCTCTTCAATAATTTGACATGCAATGATGATCTACACTTTGTAAACTTATCTTCAAATCTTTTGAAGGGGGAACTTCCCTCTTGTTTAGAACCAAAGACCAGGGTTGTTTTGTATGCTAGAAACTGTTTATCAAATGAGAACCAAGATCAGCACCCTTCTGAATTCTGCAGCAATGAGGCTCTTGCAGTGGAAATCATACCCCATCAACAGAAGCAGCATAAGAGAACAACGGGCAAAGTAGTACTTGTATCAAGTATGGGAAGTGTTGTTGGTGGAGTAATGATTGTTGGAGTGGTTATTTTGGTCGTTAGCAAGGTTCATAAAAAACAAGTTATGAAAACACCTTCAAAGTCCACATTGGAGCATGTTATCAGCCAGATACATAATGAAGATGAAGTAAAAATTCCTTCATGGTCCATAATGGAGTATATCACAAAAAGGGTTCCTGACAAACGTGCTTTGAAAACACTACCAAGATCCATAAAGGAGCATGTCATGAACCGCGTGAATCACAAACGTATTGTGAGGACACCTTCAAGGTCCACAATAGATCATGTATTGTCAGTAAACACTGCAAAACTGCTCACAGATGCAAGGTATATATCACAAACAATGAAGATGGGAGCTAGCCTTCCTGCTTATAGGACCTTTGCTTTGGATGAACTCAAGGAAGCTACAAATAATTTTGATTCATCATGTTTCATAAGTGAAGGTCCACATGGTCAGATATATAAAGGGGTGCTCTCTGATGGAATGCAAATTGCTGTTAGAAGTTTGAAAATAAGAAAGAGACATAGCCCTCAGACCTACATGCACCATGTTGAGTTGATTTCGAAACTTAGGCATTCACACTTGGTTAGTGCTCTTGGGCATTCTTTTGAGTGCAACCAGGATGATTGTGTAAACACTATATTTCTCATATTTGAGTACGTTCCAAACAGAAGTTTAAGAAGCTGCGTATCTGGATCTTCTGGGGACAAGCTTTCTTGGTCACAGAGAATAGCAGCTGCAATTGGAGTGGTGAAAGGCATTCAATTTTTGCACACAGGGATAGTGCCTGGACTATATTCAAATAATCTGAAGATAACAGATATTTTTTTGGAAAATAATCATAATGTTAAGATAAGCAGTTATAATCTTCCACTCTCAGCTGAAAACAAAAGAATGGTCAGCAATGGAACTTCACCTGGATTGAAAGGAAATTTCCAACAAAGGATAAAGGATGCAGACAAGAATGATGTCTATGATATTGGAGTGATTTTGCTAGAAATTATTCTGGGACGACCAATAATGTTCCACAATGAAGTTGGAACACTAAAAGATCTTTTACAGGTAAGCATCAAAACTGATGATATAGCTAGAAGGAGTATTGTTGACCCATCAGTTCATAAGGAATGTTCAGATGATTCATTAATGACAATGATGGAGATATGTGTAAGGTGTCTCTCTAGTGAACCAATTGATAGGCCTTCTGTTGAAGATGTTCTATGGAATTTGCAATTTGCAGCACAAATTCAGAATTCATGGAGAGGAGACTCAAATGATCACAGAGATTCACCTGCATCATCCTCCACAGAGACATAA 2511 0.3907 MAKPVSHSHLLLLLILCLAINLSEQLQFSESQTLLKVQQLLGYPSALGSLNSATDYCNIEPSPYLTLVCYEDNLTQLHVVGNNNEFTPLPQNFSSDTLFATLGTLSSLKVLSLVSLDLWGLLPESIDQLSSLEILNISSNHFYGAIPAQLSLLRNLQSVVLDHNNFKGQIPNWVGSLQGLAVLSMKSNCLSGSLPTSVNALHTLRVLDLSNNQLSGELPHLGNLANLQVLHLENNTFGPHFPSLPTKLVSLVLSNNSFMLGVPSDLSSFYQLQKLDLSLNGFVGPFPPSLLSLPSINYLDISSNKFTGMLFNNLTCNDDLHFVNLSSNLLKGELPSCLEPKTRVVLYARNCLSNENQDQHPSEFCSNEALAVEIIPHQQKQHKRTTGKVVLVSSMGSVVGGVMIVGVVILVVSKVHKKQVMKTPSKSTLEHVISQIHNEDEVKIPSWSIMEYITKRVPDKRALKTLPRSIKEHVMNRVNHKRIVRTPSRSTIDHVLSVNTAKLLTDARYISQTMKMGASLPAYRTFALDELKEATNNFDSSCFISEGPHGQIYKGVLSDGMQIAVRSLKIRKRHSPQTYMHHVELISKLRHSHLVSALGHSFECNQDDCVNTIFLIFEYVPNRSLRSCVSGSSGDKLSWSQRIAAAIGVVKGIQFLHTGIVPGLYSNNLKITDIFLENNHNVKISSYNLPLSAENKRMVSNGTSPGLKGNFQQRIKDADKNDVYDIGVILLEIILGRPIMFHNEVGTLKDLLQVSIKTDDIARRSIVDPSVHKECSDDSLMTMMEICVRCLSSEPIDRPSVEDVLWNLQFAAQIQNSWRGDSNDHRDSPASSSTET 836
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4175g00005 836 Gene3D Phosphorylase Kinase; domain 1 499 619 - -
Gabi4175g00005 836 Gene3D Ribonuclease Inhibitor 246 359 IPR032675 -
Gabi4175g00005 836 FunFam Probable inactive leucine-rich repeat receptor-like protein kinase At3g03770 246 370 - -
Gabi4175g00005 836 Pfam Protein kinase domain 544 805 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4175g00005 836 SUPERFAMILY Protein kinase-like (PK-like) 518 810 IPR011009 -
Gabi4175g00005 836 FunFam Leucine-rich repeat receptor protein kinase EMS1 146 244 - -
Gabi4175g00005 836 FunFam Putative inactive leucine-rich repeat receptor-like protein kinase 620 824 - -
Gabi4175g00005 836 SUPERFAMILY RNI-like 72 343 - -
Gabi4175g00005 836 Gene3D Ribonuclease Inhibitor 29 149 IPR032675 -
Gabi4175g00005 836 Gene3D Ribonuclease Inhibitor 150 245 IPR032675 -
Gabi4175g00005 836 ProSiteProfiles Leucine-rich repeat profile. 203 225 IPR001611 GO:0005515
Gabi4175g00005 836 Pfam Leucine rich repeat 154 214 IPR001611 GO:0005515
Gabi4175g00005 836 Gene3D Transferase(Phosphotransferase) domain 1 620 829 - -
Gabi4175g00005 836 FunFam Putative inactive leucine-rich repeat receptor-like protein kinase 512 619 - -
Gabi4175g00005 836 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 74 809 - -
Gabi4175g00005 836 ProSiteProfiles Protein kinase domain profile. 538 810 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4175g00005 Gabi-Chr4175 42193 46458 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4175g00005 43 833 Miscellaneous Gene Families AT3G03770 51.308 0.0 738
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-1 Gabi4175g00005 PK_Tyr_Ser-Thr 1.3e-15 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4175g00005 - - gmx:100797327 1312.36