Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4172g00001 ATGAAGGCCGTGCCCCTACCCTTTCAGGAATTTAGAGGGGACGGGGTGTTAGATTTTGCTTCTGGTGGCGGTGGTGGTGTTTCAGATTCGTTGTTACTACCACAGCAAGAACAATTTCTTCAAAGGTGGACCCACAGGGAAAACTGTTGCTATGTGGGCATTGAGCCCACCTCTGCTTTGGACGTCAGAAGAAAACCAAGCCCTCCCACATCCTCCTCTACACTGTCTTCCTCACACGGCAGCGGCGGCAGCTGCGGCTCAATCGATAACACCACCGGCGTGGCGGCAAAGTTCTCAGGCGAAAAGGATAACAACCCACCTCAAGCAGGGTTAGAAGTTGGCCAGGGAAGATGTGGGATGGGAATGGAGGAATGGGAGAGTGTGTTGTCTGAGTCACCAGGTCAAGACCATTCCATTCTGAAATTGATTATGGGGGACATTGAGGACCCATCTGTTGGATTGAGCAAGCTTTTGCAGAGTGGAAGTGGTTCTCAAGATGTTGAATTCAATGGGGTTGGAGTGGGTTTTAGTTTTGTGGATCAAAGTTCTGTGCTTGACCCCATTTCTAGTATCAACTTTGTGAGCAGCATTGACCCTTCTGGTCCTGGGAATTGTTCTGATTTCCCTTTCAACGTCAACTCCAATATTGCTAGAGTTGGCTCTGGTGTCAATACTAACCCTGTGTTCCCTTCTTCAGTTAGCAATCTCTCACCAACTTCACTCCCTCAGGGTGTGTTTCAGCCACAAAAACAGCAGCAACAACCAATAGAATCTCTTGATGAGAAGCTACAAGTTCTCAATCCCCAGTTCGTTTTGAACCAAAACCAAGCTCCGTTTATGCAAAACCCAGGTTTGGTTTTGCCTTTGACATATGCCCAGCTGCAAGAACATCATCACCTTCTCCCTCAGCCTCCGGCTAAACGTCTGAATTGTGGCCCTGCTGCACCAAATTATCAGGTTCCAAAGACACCCTTTTTGGATTCTGGTCAAGAGCTGTTCCTTCGGAGGCAGCAACAGCAGCTTCAACTCTTTCCTCACCATCTGCAGCAGAGGCCGTCCATAGTGGTGGCACCGAAGCAGAAAATGGTGAACCCCGGCGGCGGGAGCGGCAGTCAAGACTTGGCGACCCACCAGCTTCAACAGGCTATAATTGACCAGCTTTTCAAGGCTGCAGAGATGATGGACGGCAGTAATCCGGAACACGCGCACGGGATATTGGCGCGGCTCAATCAGCAACTTTCTCCCATTGGGAAGCCTTTTCAGAGGGCTGCTTTTTATTTCAAGGAGGCCATGCAAATGTTTCTCCATTCAAATGGCAACAACAGTTCTTTGGCCTTCTCGCCCACTGGTCTATTGCTCAAGATTGGTGCTTACAAGTCATTCTCAGAAATCTCACCAGTTCTGCAATTTGCCAATTTCACATGTAGCCAGGCATTGCTTGAAGCTGTGGAAGGGTTTGATCGCATTCACATAGTAGATTTTGATATTGGGTTTGGTGGACAGTGGTCTTCTTTCATGCAAGAATTAGCACTCAGGAATGGCGGTGCACCTGCTCTCAAGATCACAGCATTTGTGTCACCCTCCCACCATGATGAAATTGAGCTCAGTTTCACTCACGAGAATTTGAAGCAATATGCTGATGAGATTAACATGACCTTTGAGCTTGCGATTCTTAGCCTCGAGTCTTTGAATTCTGCTTCCTGGCCCCAGCCACTTCATGGTTGCGAAGCTGTTGTGGTTAACTTGCCTATTGGCTCTTTTTCAAATTACCCCGCATACCTTCCTTTGGTCCTTCGCTTTGTCAAGCAGCTCATGCCCCAAATTGTGGTTACATTGGATAGAAGTTGTGATCGAACTGATGCACCATTTCCTCAGCATCTGATTTTTGCACTTCATTCTTATTCAGGGCTACTTGAGTCACTTGATGCTGTTAATGTTCACCCAGATGTCCTGCAGATGATTGAGAAGTATTATCTTCAACCAGCAATGGAGAAGCTTGTTCTGGGTCGTCAGCATTTTCAGGAAAGAACACTTCCTTGGAAAAACCTGCTCTTGTCATCTGGGTTCTCCCCGGTGACATTTAGTAACTTTACAGAGTCCCAAGCAGAGTGTTTGGTGCAGAGGACTCCTGGTATGGGATTCCATGTGGAGAAGAGGCAGTTTTCCCTTGTTCTATGCTGGCAAAGGAAGGATCTCATCTCAGTTTCAACTTGGAGATGCTGA 2223 0.4764 MKAVPLPFQEFRGDGVLDFASGGGGGVSDSLLLPQQEQFLQRWTHRENCCYVGIEPTSALDVRRKPSPPTSSSTLSSSHGSGGSCGSIDNTTGVAAKFSGEKDNNPPQAGLEVGQGRCGMGMEEWESVLSESPGQDHSILKLIMGDIEDPSVGLSKLLQSGSGSQDVEFNGVGVGFSFVDQSSVLDPISSINFVSSIDPSGPGNCSDFPFNVNSNIARVGSGVNTNPVFPSSVSNLSPTSLPQGVFQPQKQQQQPIESLDEKLQVLNPQFVLNQNQAPFMQNPGLVLPLTYAQLQEHHHLLPQPPAKRLNCGPAAPNYQVPKTPFLDSGQELFLRRQQQQLQLFPHHLQQRPSIVVAPKQKMVNPGGGSGSQDLATHQLQQAIIDQLFKAAEMMDGSNPEHAHGILARLNQQLSPIGKPFQRAAFYFKEAMQMFLHSNGNNSSLAFSPTGLLLKIGAYKSFSEISPVLQFANFTCSQALLEAVEGFDRIHIVDFDIGFGGQWSSFMQELALRNGGAPALKITAFVSPSHHDEIELSFTHENLKQYADEINMTFELAILSLESLNSASWPQPLHGCEAVVVNLPIGSFSNYPAYLPLVLRFVKQLMPQIVVTLDRSCDRTDAPFPQHLIFALHSYSGLLESLDAVNVHPDVLQMIEKYYLQPAMEKLVLGRQHFQERTLPWKNLLLSSGFSPVTFSNFTESQAECLVQRTPGMGFHVEKRQFSLVLCWQRKDLISVSTWRC 740
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4172g00001 740 MobiDBLite consensus disorder prediction 60 86 - -
Gabi4172g00001 740 ProSiteProfiles GRAS family profile. 374 739 IPR005202 -
Gabi4172g00001 740 MobiDBLite consensus disorder prediction 64 86 - -
Gabi4172g00001 740 Pfam GRAS domain family 384 739 IPR005202 -
Gabi4172g00001 740 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 347 735 IPR005202 -
Gabi4172g00001 740 MobiDBLite consensus disorder prediction 96 115 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4172g00001 Gabi-Chr4172 36229 44003 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4172g00001 383 740 GRAS Transcription Factor Family AT4G00150 59.280 3.10e-138 417
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Gabi4172g00001 GRAS 1.2e-86 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4172g00001 - - gmx:100805945 1132.47