Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4171g00003 ATGAGAATCAATCCGACTACCTCTGGTCCTGAAGTTTCTGCGCTTGAAAAAAAAAATCAGGGACGTATCTCCCAAATAATTGGGCCGGTACTAGATGTAGCTTTTCCCCCGGGGAAGATGCCTAATATTTACAACGCTCTTGTAGTTAAGGGTCAAGATACTGTTGGTCAACAAATTAACGTGACTTGTGAAGTACAGCAATTATTGGGAAATAATCGAGTGAGAGCTGTAGCTATGAGTGCTACAGATGGTCTAATGAGAGGAATGGAAGTGATTGACACGGGAGCTCCTCTAAGTGTTCCGGTCGGTGGAACAACTCTTGGACGAATTTTCAATGTACTTGGAGAGCCTATTGATAATTTAGGTCCTGTAGATACTCGCACAACATCTCCTATTCATAGATCTGCGCCCGCCTTTATACAGTTAGATACAAAATTATCCATTTTTGAAACAGGAATTAAAGTAGTAGATCTTTTAGCTCCTTATCGTCGTGGAGGAAAAATAGGACTTTTCGGTGGAGCTGGAGTGGGTAAAACAGTACTTATTATGGAATTGATCAATAACATTGCCAAAGCTCATGGAGGTGTATCTGTATTTGGTGGGGTTGGTGAGCGGACTCGTGAGGGAAATGATCTTTATATGGAAATGAAAGAATCTGGGGTAATTAACGAAAAAAATATTGCGGAATCCAAAGTAGCTCTCGTATATGGTCAAATGAATGAACCACCCGGAGCTCGTATGAGAGTTGGTTTAACTGCCCTAACTATGGCGGAATATTTTCGCGATGTCAATGAACAAGATGTACTTCTATTTATCGACAATATCTTCCGCTTCGTCCAAGCAGGATCCGAAGTATCCGCCTTATTGGGTCGCATGCCTTCCGCTGTGGGTTATCAACCCACCCTTAGTACCGAAATGGGTTCTTTACAAGAAAGAATTACTTCTACCAAACAAGGGTCCATAACATCTATTCAAGCTGTTTATGTACCTGCAGACGATTTGACCGATCCTGCCCCTGCCACGACGTTTGCACATTTAGATGCTACTACTGTATTATCAAGGGGATTAGCTGCCAAAGGTATCTATCCAGCAGTAGATCCTTTAGATTCAACATCAACTATGCTGCAACCTCGTATCGTTGGTGAAGAACATTATGAAACTGCTAAAAAGGTTAAACAAACTTTACAACGTTACAAGGAACTTCAGGACATTATAGCTATCCTTGGGTTGGACGAATTATCCGAAGACGATCGCTTAACCGTCGCAAGAGCACGAAAAATAGAGCGTTTCTTATCACAGCCGTTTTTCGTAGCAGAAGTATTTACAGGTTCGCCGGGGAAATATGTTGGTCTAGCAGAAACAATTAGAGGGTTTAAATTGATTCTTTCTGGAGAATTAGATGGTCTTCCCGAACAATCCTTTTATTTGGTAGGTAATATTGATGAAGCTACTGCGAAGGCTACGAACTTAGAAATGGAGAGCAAATTGAAGAAATGA 1497 0.4135 MRINPTTSGPEVSALEKKNQGRISQIIGPVLDVAFPPGKMPNIYNALVVKGQDTVGQQINVTCEVQQLLGNNRVRAVAMSATDGLMRGMEVIDTGAPLSVPVGGTTLGRIFNVLGEPIDNLGPVDTRTTSPIHRSAPAFIQLDTKLSIFETGIKVVDLLAPYRRGGKIGLFGGAGVGKTVLIMELINNIAKAHGGVSVFGGVGERTREGNDLYMEMKESGVINEKNIAESKVALVYGQMNEPPGARMRVGLTALTMAEYFRDVNEQDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLSTEMGSLQERITSTKQGSITSIQAVYVPADDLTDPAPATTFAHLDATTVLSRGLAAKGIYPAVDPLDSTSTMLQPRIVGEEHYETAKKVKQTLQRYKELQDIIAILGLDELSEDDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGFKLILSGELDGLPEQSFYLVGNIDEATAKATNLEMESKLKK 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4171g00003 498 SUPERFAMILY C-terminal domain of alpha and beta subunits of F1 ATP synthase 375 490 - -
Gabi4171g00003 498 Gene3D - 18 97 - -
Gabi4171g00003 498 PANTHER ATP SYNTHASE 16 496 - -
Gabi4171g00003 498 Pfam ATP synthase alpha/beta family, beta-barrel domain 23 95 IPR004100 GO:0046034|GO:1902600
Gabi4171g00003 498 SMART AAA_5 164 356 IPR003593 GO:0016887
Gabi4171g00003 498 Gene3D - 98 374 IPR027417 -
Gabi4171g00003 498 Hamap ATP synthase subunit beta [atpB]. 18 490 IPR005722 GO:0015986|GO:0045261|GO:0046933
Gabi4171g00003 498 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 99 377 IPR027417 -
Gabi4171g00003 498 NCBIfam F0F1 ATP synthase subunit beta 20 490 IPR005722 GO:0015986|GO:0045261|GO:0046933
Gabi4171g00003 498 SUPERFAMILY N-terminal domain of alpha and beta subunits of F1 ATP synthase 19 97 IPR036121 GO:0046034|GO:1902600
Gabi4171g00003 498 FunFam ATP synthase subunit beta, chloroplastic 18 97 - -
Gabi4171g00003 498 CDD F1-ATPase_beta_CD 99 377 - -
Gabi4171g00003 498 FunFam ATP synthase subunit beta 375 494 - -
Gabi4171g00003 498 Pfam ATP synthase alpha/beta family, nucleotide-binding domain 152 372 IPR000194 GO:0005524
Gabi4171g00003 498 Gene3D - 375 498 IPR024034 -
Gabi4171g00003 498 ProSitePatterns ATP synthase alpha and beta subunits signature. 363 372 IPR020003 GO:0005524
Gabi4171g00003 498 FunFam ATP synthase subunit beta 98 374 - -
Gabi4171g00003 498 CDD ATP-synt_F1_beta_C 379 486 - -
Gabi4171g00003 498 CDD ATP-synt_F1_beta_N 19 98 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4171g00003 Gabi-Chr4171 7877 9965 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4171g00003 151 436 Primary Pumps ATPases(2) AT1G78900 30.164 2.23e-27 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4171g00003 K02112 - qsa:O6P43_035109 946.806