Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4170g00002 ATGGCTCGGACCCCGCAAGACCACGAAGAGCCACTCTTAGTGGAAGAAGAGAGAGAAGAAACAGCTTACGATTCCTCAGAGAAGATAGTGGTTGTTGGAATCGACGAGTCCGATAACGAAGGGAACAACAACTGGGGTAAGGTGCCGCCATTCTCGTGGAAGAAGCTATGGCTGTTCACTGGGCCGGGCTTGCTGATGAGCATCGCCTTCCTGGATCCTGGGAACCTGGAGGGGGACCTTCAGGCCGGAGCAATTGCTGGGTACTCGCTGTTGTGGCTTCTCTTGTGGGCCACGGCCATGGGCCTCTTGATTCAGCTCTTGTCGGCCCGGCTCGGCGTGGCTACTGGGAGGCACTTGGCTGAGCTCTGCAGGGAAGAGTACCCTAAGTGGGCCAGCATGGTGCTCTGGGTCATGGCTGAGTTGGCTTTGATTGGTTCAGATATACAAGAAGTTATTGGTAGCGCTATTGCTATTAGGATCCTCAGTAATGGGTTTGTGCCCCTTTGGGGTGGGGTCATCATTACAGCTCTTGATTGTTTTATTTTTCTATTTCTTGAGAACTATGGTGTGAGGACATTGGAAGCTCTTTTTGCTGTCCTCATTGGTATAATGGCACTCGCGTTCGCATGGATGTTTGGTGAAGCAAAGCCCAGTGGCAAGGAACTTCTTCTTGGCATTTTGATTCCTAAACTCAGCTCCAGAACTATACAGCAGGCTGTTGGAGTTGTGGGATGCCTTATTATGCCTCACAATTTGTTCTTGCACTCTGCTCTTGTTCAATCAAGGCAGGTTGACCGCAGCAAGAAGGGCCGAGTTCAAGAAGCTCTTAATTATTACTCTATAGAGTCCACCCTTGCCCTTATAGTCTCCTTTGTCATTAATATATTTGTCACAACTGTGTTTGCTAAGGGGTTTTATGGTTCTGAACTAGCAAATAGCATTGGTCTTGCAAATGCAGGACAGTACCTTCAGGAGACGTATGGGGGTGGACTATTTCCAATATTATATATATGGGGTATTGGGTTATTAGCAGCCGGCCAGAGTAGCACTATTACTGGTACCTATGCTGGACAATTTATCATGGGAGGCTTTCTAAATTTAAGGTTGAAGAAATGGACGAGGGCATTAATTACCCGAAGTTGTGCAATAATCCCAACCATGATAGTGGCTCTTATATTTGATACCTCAGAGCAATCATTAGATGTTCTGAATGAGTGGCTTAATGTTCTTCAGTCAGTCCAAATCCCCTTTGCACTTATTCCTTTGCTCTGTCTGGTGTCAAAGGAGCAGATAATGGGCAGCTTCAAAATTGGCTCTGTCCTCAAGACTATTTCTTGGTTTGTGGCTGCTCTGGTGATACTGATTAATGGCTATCTTTTGGTGGAGTTCTTCTCCTCTGAAGTGAATGGAGCAATAATTGGCGCTGTAGTGTGTGTAGTAACTGCTGCATATGTTGCATTCATATTATACCTTATTCGGCGGGCCATTACCTTTTCACCTTGGCAAACCATAACTCCATCAAAGACAGCTGCTCAGTCAGAAAGTTGA 1548 0.4645 MARTPQDHEEPLLVEEEREETAYDSSEKIVVVGIDESDNEGNNNWGKVPPFSWKKLWLFTGPGLLMSIAFLDPGNLEGDLQAGAIAGYSLLWLLLWATAMGLLIQLLSARLGVATGRHLAELCREEYPKWASMVLWVMAELALIGSDIQEVIGSAIAIRILSNGFVPLWGGVIITALDCFIFLFLENYGVRTLEALFAVLIGIMALAFAWMFGEAKPSGKELLLGILIPKLSSRTIQQAVGVVGCLIMPHNLFLHSALVQSRQVDRSKKGRVQEALNYYSIESTLALIVSFVINIFVTTVFAKGFYGSELANSIGLANAGQYLQETYGGGLFPILYIWGIGLLAAGQSSTITGTYAGQFIMGGFLNLRLKKWTRALITRSCAIIPTMIVALIFDTSEQSLDVLNEWLNVLQSVQIPFALIPLLCLVSKEQIMGSFKIGSVLKTISWFVAALVILINGYLLVEFFSSEVNGAIIGAVVCVVTAAYVAFILYLIRRAITFSPWQTITPSKTAAQSES 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4170g00002 515 PRINTS Natural resistance-associated macrophage protein signature 190 211 IPR001046 GO:0016020|GO:0030001|GO:0046873
Gabi4170g00002 515 PRINTS Natural resistance-associated macrophage protein signature 135 161 IPR001046 GO:0016020|GO:0030001|GO:0046873
Gabi4170g00002 515 PRINTS Natural resistance-associated macrophage protein signature 374 391 IPR001046 GO:0016020|GO:0030001|GO:0046873
Gabi4170g00002 515 PRINTS Natural resistance-associated macrophage protein signature 239 262 IPR001046 GO:0016020|GO:0030001|GO:0046873
Gabi4170g00002 515 PRINTS Natural resistance-associated macrophage protein signature 165 184 IPR001046 GO:0016020|GO:0030001|GO:0046873
Gabi4170g00002 515 PRINTS Natural resistance-associated macrophage protein signature 346 365 IPR001046 GO:0016020|GO:0030001|GO:0046873
Gabi4170g00002 515 PRINTS Natural resistance-associated macrophage protein signature 408 427 IPR001046 GO:0016020|GO:0030001|GO:0046873
Gabi4170g00002 515 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 45 493 IPR001046 GO:0016020|GO:0030001|GO:0046873
Gabi4170g00002 515 NCBIfam metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 54 432 IPR001046 GO:0016020|GO:0030001|GO:0046873
Gabi4170g00002 515 NCBIfam Nramp family divalent metal transporter 61 430 - -
Gabi4170g00002 515 Pfam Natural resistance-associated macrophage protein 77 438 IPR001046 GO:0016020|GO:0030001|GO:0046873
Gabi4170g00002 515 MobiDBLite consensus disorder prediction 1 25 - -
Gabi4170g00002 515 Hamap Divalent metal cation transporter MntH [mntH]. 37 464 IPR001046 GO:0016020|GO:0030001|GO:0046873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4170g00002 Gabi-Chr4170 35664 39648 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4170g00002 5 501 Inorganic Solute Cotransporters AT2G23150 78.000 0.0 788
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4170g00002 K21398 - gmx:100812381 882.093