Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4169g00002 ATGGAGCGAGTGATATCATCTTTCATAAGTTCGTTTCTTCTTTGGTCACTCTTGTTGCTTCTTTTGGTGCTTAAGGTTTCTGGCAACGCTGAAGGTGATGCCCTGACTGCATTAAAGAACAGTTTGAATGATCCTAGCAATAATCTTCGAAGCTGGGATGTTACCCTTGCCAATCCATGCACATGGTTTCTTGTCAAATGCAATGGTGATAATAGTGTGACCCGTGTTTATCTTGGAAATGCAAACCTTTCGGGACAACTGGTTCCACAGCTTGGTCAGCTCCCAAATTTGCAATACTTGGAACTTTACAGTAATAACATAACTGGGAATATCCCAAAGGAGCTTGGAAATTTGACAAAGTTGGAGAGCTTGGATCTTTACTCGAACAAGTTAACTGGTCTCATTCCGGACACACTGGCCAACCTTAAACAACTACGTTACCTGCGCCTCAACAATAACAGCTTGTCTGGAAACATTCCTATGTCTTTGACCAATGTTACTACCCTGCAAATCCTTGATTTAGCAAACAACAACTTATCAGGAGATGTCCCAGTCAATGGTTCATTTTCAATGTTTACTCCAGTCAGTTTTGACCATAACCCTTTCTTGAAGAAGAAATCCCCTCTAGCTCCACCACTTTCTCGGCAACAACAAACTACGTCAGGTAGCAGTGCCACTGGGGCTATTGCTGGAGGAGTTGCTGTGGGTGTTGCTGTGTTGTTTGCTGCCCCTGCAATTGCACTTGCTTATTGCCTTAGAAGAAAGCCAAAGGATTATTTCTTTGATGTTCCTGCTGAGCAGGATCCTGAAGTTCACCTTGGTCAGCTTATAAAGTTTTCACTGCGGGAACTGCAAGTTGCAACAGATAGTTTTGATAAGAATAACCTTCTTGGTACAGGTGGATTTGGCAAAGTTTATAAAGGACGCTTAGCAAATGGTTCTCTTGTAGCAGTAAAAAGACTTAAAGAGGAACGCACCCAAGGTGGGGAGCTACAATTTCAAACTGAAGTGGAAATGATCAGCATGGCTGTGCATCGAAATTTGCTTCGGCTGCGTGGTTTTTGCGCAACAACTACTGAGCGGTTACTTGTATATCCTTTCATGGTTAACGGAAGTGTAGCATCTTGTTTACGTGAGCGTCCGGAATCTCAACCACCACTTGAGTGGTCAAAAAGGAAGCATATTGCCCTGGGAGCTGCTAGGGGCCTTGCCTATTTGCATGATCATTGTAACCCGAAGATTATTCATCGTGATGTCAAAGCTGCTAATATATTGTTGGATGAGGAATTTGAAGCAGTTGTTGGAGATTTTGGTTTAGCAAAGCTTATGGATTACAAAAAAACTCATGTTACCACTGCTGTATGTGGTACCCTTGGGCATATAGCACCTGAGTACCTCTCAACTGGAAAGTCTTCAGAGAAGACTGACGTTTTTGGATATGGTGTTATGCTTCTTGAACTAATAACTGGAAAGAGGGCTTTTGATCTAGCACGACTTGCCGAAAATGATGATATCATGTTGCTTGATTGGGTTAAAAAACTTCTGAAAGAGAGGAGATTGGAGAAACTGGTGGATGCAAATTTAAAGGGAAATTATGATGAGGAGGAGGTAGAACAGCTAATCCAAATGGCATGTCTATGCACACAAGGGTCCCATTGGGAAAGGCCCAAGATGTCTGAGGTGGTGAGAATGCTAGAGGGTGATGGTTTGCCAGAAAAATGGGATCAATGGCAGAAAGAGGAGATTATCCGCAAAGATTTCAACCAAACCCATCAGTATCACCACACTGGTGATTTGATAATGGACTCAACTGCAAATATGCAACCAGATATACTATCAGGTCCTAGATGA 1851 0.4257 MERVISSFISSFLLWSLLLLLLVLKVSGNAEGDALTALKNSLNDPSNNLRSWDVTLANPCTWFLVKCNGDNSVTRVYLGNANLSGQLVPQLGQLPNLQYLELYSNNITGNIPKELGNLTKLESLDLYSNKLTGLIPDTLANLKQLRYLRLNNNSLSGNIPMSLTNVTTLQILDLANNNLSGDVPVNGSFSMFTPVSFDHNPFLKKKSPLAPPLSRQQQTTSGSSATGAIAGGVAVGVAVLFAAPAIALAYCLRRKPKDYFFDVPAEQDPEVHLGQLIKFSLRELQVATDSFDKNNLLGTGGFGKVYKGRLANGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCATTTERLLVYPFMVNGSVASCLRERPESQPPLEWSKRKHIALGAARGLAYLHDHCNPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKKTHVTTAVCGTLGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGKRAFDLARLAENDDIMLLDWVKKLLKERRLEKLVDANLKGNYDEEEVEQLIQMACLCTQGSHWERPKMSEVVRMLEGDGLPEKWDQWQKEEIIRKDFNQTHQYHHTGDLIMDSTANMQPDILSGPR 616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4169g00002 616 Pfam Protein kinase domain 292 562 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4169g00002 616 Gene3D Transferase(Phosphotransferase) domain 1 368 585 - -
Gabi4169g00002 616 SMART LRR_typ_2 142 165 IPR003591 -
Gabi4169g00002 616 SMART LRR_typ_2 166 191 IPR003591 -
Gabi4169g00002 616 SMART LRR_typ_2 94 117 IPR003591 -
Gabi4169g00002 616 SMART LRR_typ_2 118 141 IPR003591 -
Gabi4169g00002 616 FunFam Somatic embryogenesis receptor kinase 1 260 367 - -
Gabi4169g00002 616 ProSiteProfiles Protein kinase domain profile. 291 570 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4169g00002 616 Pfam Leucine rich repeat N-terminal domain 29 68 IPR013210 -
Gabi4169g00002 616 SMART serkin_6 291 565 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4169g00002 616 SUPERFAMILY Protein kinase-like (PK-like) 270 566 IPR011009 -
Gabi4169g00002 616 Gene3D Phosphorylase Kinase; domain 1 260 367 - -
Gabi4169g00002 616 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 12 575 - -
Gabi4169g00002 616 Pfam Leucine rich repeat 95 155 IPR001611 GO:0005515
Gabi4169g00002 616 ProSitePatterns Serine/Threonine protein kinases active-site signature. 414 426 IPR008271 GO:0004672|GO:0006468
Gabi4169g00002 616 FunFam Somatic embryogenesis receptor kinase 1 27 218 - -
Gabi4169g00002 616 Gene3D Ribonuclease Inhibitor 27 209 IPR032675 -
Gabi4169g00002 616 ProSitePatterns Protein kinases ATP-binding region signature. 297 319 IPR017441 GO:0005524
Gabi4169g00002 616 FunFam Somatic embryogenesis receptor-like kinase 1 368 585 - -
Gabi4169g00002 616 SUPERFAMILY L domain-like 31 200 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4169g00002 Gabi-Chr4169 59403 66324 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4169g00002 1 616 Receptor kinase-like Gene Family AT4G33430 69.624 0.0 877
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Gabi4169g00002 Pkinase 7e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4169g00002 K13416 - qsa:O6P43_012307 875.544