Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4166g00001 ATGACCTCGGAAGATGATAACATAGGAGAATGGTTGAGTTTAGGCCTCATAGGAGACATGCCTCTGGAAGCAGCTAAGCAAAACCCAGAATCCCAATCAAAACCTCTCCACAACAAGGTATTCTCATGCAACTTCTGTATGAGAAAGTTTTACAGTTCACAAGCCTTGGGTGGTCACCAAAATGCACACAAAAGGGAAAGAGAAGCAGCTAGAAGTTACCAATCTCAGAGGATGATGACAACATCAATGGGGCTTTGTTACTCTTCTTTGGCTACTAGATCACTGGGATTACAAACCCACTCGCTTGTGCACAAGCCAAGTAGAGAAAAGCCAACTATGTTGGCTCGATTCAGTGATTCCAGTTCAGGGATTGGAATGGCATGGACACCCTTTATGCTTGAACAAGCTGTGGATTTCATATGGCCAGGAAGCTTTCGAATGGACTCGCCAAAGCAAGAATCAGATATAAATGTGCTTGACTTAGATCTTAGGCTCTGA 498 0.4378 MTSEDDNIGEWLSLGLIGDMPLEAAKQNPESQSKPLHNKVFSCNFCMRKFYSSQALGGHQNAHKREREAARSYQSQRMMTTSMGLCYSSLATRSLGLQTHSLVHKPSREKPTMLARFSDSSSGIGMAWTPFMLEQAVDFIWPGSFRMDSPKQESDINVLDLDLRL 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4166g00001 165 ProSitePatterns Zinc finger C2H2 type domain signature. 43 63 IPR013087 -
Gabi4166g00001 165 Gene3D Classic Zinc Finger 24 89 - -
Gabi4166g00001 165 PANTHER ZINC FINGER PROTEIN 4-LIKE 3 165 - -
Gabi4166g00001 165 SUPERFAMILY beta-beta-alpha zinc fingers 37 68 IPR036236 -
Gabi4166g00001 165 ProSiteProfiles Zinc finger C2H2 type domain profile. 41 68 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4166g00001 Gabi-Chr4166 32150 32685 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4166g00001 39 159 C2H2 Transcription Factor Family AT1G24625 40.800 9.51e-22 85.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4166g00001 - - ccaj:109809498 248.825