Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4163g00002 ATGGGATCTGGTAATGAGGTTCACTCTGTTGGAGAGTTCAATTTGGATGCCAAGTGGCTCATAGATCCCAAACAACTATTTGTTGGGCCTAAAATTGGGGAAGGTGCTCATGCCAAAGTTTATGAAGGAAAATATAAAACTCAGAACGTTGCTGTCAAGATTATTAATAAGGGAGAAACCCCAGAAGAGATTTCTAGGAGAGAGGCTCGGTTTGCCAGAGAGATTGCCATGTTATCTAAAGTTCAACACAAAAATCTGGTTAAGTTCATTGGGGCCTGCAAAGAACCTGTTATGGTTATAGTAACTGAACTTCTGTTAGGTGGAACATTGCGGAAATATCTATGGAGTATACGGCCGAAGTGCTTGGATATGCATGTGGCGGTTGGATTTGCTCTTGATATTGCCCGAGCAATGGAATGCTTACACTGCCACGGGATCATTCACCGTGACCTTAAACCTGATAACTTGATCTTGACAGCAGATCATAAAACAGTTAAACTTGCTGATTTTGGTCTAGCCAGAGAAGAGTCCTTAACAGAGATGATGACTGCTGAGACAGGAACATATCGTTGGATGGCTCCAGAACTGTACAGCACAGTCACTCTAAGACAAGGGGAGAAGAAGCATTACAACCACAAGGTGGATGCTTATAGCTTTGCAATTGTGTTGTGGGAGCTCATCCATAATAAGTTGCCCTTTGAAGGCATGTCTAATCTACAAGCAGCATATGCAGCTGCTTTTAAGAATACAAGGCCCAGTGCTGAAGACCTCCCTGAGGATTTAGCTCTGATTGTAACTTCATGTTGGAAAGAGGATCCAAATGATAGGCCAAATTTTACTCAAATAATACAGATGCTCCTTCGATATCTCACTACTATATCACCATCCGAGCCAGTTGTTCCTCTGCGAATCGCTTCATCTAAGAATTCTGTATTACCACCAGAATCTCCAGGTACAAGTGCTTTAATGGCTGGAAGAGATGATGATTCTGGAGAAACCCCAAAAGTCAGTATTGAAGACAGGGCTAAAGGGATTTTCTTCTGCTTTAACCAGTGTTACTGA 1062 0.4228 MGSGNEVHSVGEFNLDAKWLIDPKQLFVGPKIGEGAHAKVYEGKYKTQNVAVKIINKGETPEEISRREARFAREIAMLSKVQHKNLVKFIGACKEPVMVIVTELLLGGTLRKYLWSIRPKCLDMHVAVGFALDIARAMECLHCHGIIHRDLKPDNLILTADHKTVKLADFGLAREESLTEMMTAETGTYRWMAPELYSTVTLRQGEKKHYNHKVDAYSFAIVLWELIHNKLPFEGMSNLQAAYAAAFKNTRPSAEDLPEDLALIVTSCWKEDPNDRPNFTQIIQMLLRYLTTISPSEPVVPLRIASSKNSVLPPESPGTSALMAGRDDDSGETPKVSIEDRAKGIFFCFNQCY 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4163g00002 353 MobiDBLite consensus disorder prediction 308 335 - -
Gabi4163g00002 353 Pfam Protein tyrosine and serine/threonine kinase 29 286 IPR001245 GO:0004672|GO:0006468
Gabi4163g00002 353 ProSitePatterns Serine/Threonine protein kinases active-site signature. 146 158 IPR008271 GO:0004672|GO:0006468
Gabi4163g00002 353 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 19 286 - -
Gabi4163g00002 353 PRINTS Tyrosine kinase catalytic domain signature 257 279 IPR001245 GO:0004672|GO:0006468
Gabi4163g00002 353 PRINTS Tyrosine kinase catalytic domain signature 102 115 IPR001245 GO:0004672|GO:0006468
Gabi4163g00002 353 PRINTS Tyrosine kinase catalytic domain signature 140 158 IPR001245 GO:0004672|GO:0006468
Gabi4163g00002 353 PRINTS Tyrosine kinase catalytic domain signature 214 236 IPR001245 GO:0004672|GO:0006468
Gabi4163g00002 353 FunFam Kinase suppressor of Ras 1 15 105 - -
Gabi4163g00002 353 Gene3D Transferase(Phosphotransferase) domain 1 107 300 - -
Gabi4163g00002 353 SMART serkin_6 26 290 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4163g00002 353 ProSiteProfiles Protein kinase domain profile. 26 290 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4163g00002 353 FunFam serine/threonine-protein kinase HT1 107 307 - -
Gabi4163g00002 353 SUPERFAMILY Protein kinase-like (PK-like) 18 310 IPR011009 -
Gabi4163g00002 353 ProSitePatterns Protein kinases ATP-binding region signature. 32 53 IPR017441 GO:0005524
Gabi4163g00002 353 CDD STKc_MAP3K-like 32 286 - -
Gabi4163g00002 353 Gene3D Phosphorylase Kinase; domain 1 14 105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4163g00002 Gabi-Chr4163 43297 55105 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4163g00002 9 353 MAP Kinase Kinase Kinase AT5G50180 77.391 0.0 572
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Gabi4163g00002 PK_Tyr_Ser-Thr 5.5e-57 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4163g00002 - - gmx:100809826 652.514